Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1443 ATGGCTAATAAACTCATTCGATTCGTGGCTATTTTCTGTCTTGTTTTCCAAGCCCATGCCTCGTTAAACCTTGATCCTTCAGATCTCAGAGCTTTTTCTATCATCAAAAATGACTTGGGAATTACTGGTCAAACCCATCTTTCTCACTCCCCATGCCGCACCACCGGTGTGTTTTGTGAGAGACGGCTTTCCGATAACAATACTTATGTTTTAAGGATCACCAAGCTTGTTTTTAAGTCACGGGGCCTCGCCGGTTTTCTTTCTCCGGCTATTGGACGGTTGACGGAGTTGAAAGAGCTTACTGTTTCTAACAATTTCCTCGTTGACCAGGTACCACCTCAAATTGTTGACTGTCGGAAACTTGAAATTCTAGATCTTCAAAACAACCAGTTTTCTGGTAAAATTCCATCTGGGTTCTCCTCGCTTATTCGCCTTCGGGTCATTGATCTTTCCTCTAATAAATTCTCGGGGAATTTGGATTTCTTGAAGTATTTTCCCAATTTGGAAAATCTCTCTGTAGCCAACAATTTCTTCACGGGGAAAATACCAGCTTCAATTCGTTCTTTTCGCAATCTCCGAGTCTTTAACTTCTCTGGAAATAGCTTTCTTGAAGGTTCAGTGCCCGTAGTAAAAGGTCTCGAGTATTCAGCAAGTGAAGTTCCGAGGCGTTATATTCTGGCTGAGAATTCGAGCTCAAAAGGCAGGAGCAGCTCAGCAACAGCGCCAACTTCAAGTGCTCAAGCTCCGTCTCCTTCCGCATCCCCTCATCAGCATCGTAAAAACCCCAGAAAAAAGGTACTCGCTTGGATACTTGGATTCCTGGCTGGAGCAATTGCCGGAAGTTTATCAGGGTTTATCTTCTCTCTACTATTTAAACTCATTTTAGCAGCTGTAAAAGGTGGAAGCAAGGATTCCGGCCCCACTATCTATGCTCCGAAAATAATGAAACAAGATGATTTGGCTTTTCTAGAGAAAGATGATGCGTTAGCATCACTTGAACTAATTGGAAAAGGTGGCTGTGGAGAAGTTTACAAGGCGGAGATACCCGAGAATAGCGGGAAAATGTTTGCAATAAAGAAGATTGTTCAACCTCCGATAGAAGCAGCGGAGTTGGCTGATGAAGATAGCAGATTTCTGCACAGGAAAATGCGTCAGATTAAGTCAGAGATAAATACGGTGGGTCAAATTCGGCATCGGAATCTTCTTCCGCTTGTGGCACATGTCCTTCGTCCTGACTGCCACTACCTTGTGTACGAATTGATGAGGAATGGGAGTCTACAAGATATGTTGAGTCAGGTTTCGGCAGGAATGAGAGAGCTAGATTGGATTGCTAGGCACAAGATCGCTCTTGGAGTGGCATCTGGCCTTGAATATCTACACCTGCACCATAACCCCCGTATAATTCATAGGGATCTCAAGCCTGCAAATGTTTTGCTTGATGATGACATGGAAGCTCGAATTGCCGATTTTGGGCTGGCAAAAGCAATGCCAGATGCTCAGACTCACATCACAGCTTCGAATGTTGCCGGTACTGTGGGATACATAGCACCAGAGTATCATCAGACACTGAAGTTTACAGATAAGTGTGACATATACGGCTTTGGGGTTCTACTAGGTGTCTTAGTGATTGGGAAACTTCCATCTGATGTGTTTTTTCAGGATACGGATGAGATGAGTTTGGTTAAATGGATGAGAAATGTGATGGCTTCAGACAATCCTAAGAGAGTCATTGATCGAAAGCTTCAAGGAAACGGCTGGGAGGAGCAAATGCTCTTGGCCCTCAAAATTGCCTGCTTTTGCACTATGGACAATCCCAAAGAGAGACCTGACAGTAAGGATGTCAGGTGCATGCTATCTCAGATCAAGCACGATGTACCTACCACTCCTTCGGAGAATGTCTAA 1902 44.11 MANKLIRFVAIFCLVFQAHASLNLDPSDLRAFSIIKNDLGITGQTHLSHSPCRTTGVFCERRLSDNNTYVLRITKLVFKSRGLAGFLSPAIGRLTELKELTVSNNFLVDQVPPQIVDCRKLEILDLQNNQFSGKIPSGFSSLIRLRVIDLSSNKFSGNLDFLKYFPNLENLSVANNFFTGKIPASIRSFRNLRVFNFSGNSFLEGSVPVVKGLEYSASEVPRRYILAENSSSKGRSSSATAPTSSAQAPSPSASPHQHRKNPRKKVLAWILGFLAGAIAGSLSGFIFSLLFKLILAAVKGGSKDSGPTIYAPKIMKQDDLAFLEKDDALASLELIGKGGCGEVYKAEIPENSGKMFAIKKIVQPPIEAAELADEDSRFLHRKMRQIKSEINTVGQIRHRNLLPLVAHVLRPDCHYLVYELMRNGSLQDMLSQVSAGMRELDWIARHKIALGVASGLEYLHLHHNPRIIHRDLKPANVLLDDDMEARIADFGLAKAMPDAQTHITASNVAGTVGYIAPEYHQTLKFTDKCDIYGFGVLLGVLVIGKLPSDVFFQDTDEMSLVKWMRNVMASDNPKRVIDRKLQGNGWEEQMLLALKIACFCTMDNPKERPDSKDVRCMLSQIKHDVPTTPSENV 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48959387 48961288 + evm.model.ptg000008l.92 HCH8g1443 550541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1443 633 Gene3D Transferase(Phosphotransferase) domain 1 421 631 - -
HCH8g1443 633 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 260 623 IPR051564 GO:0016020(PANTHER)
HCH8g1443 633 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 68 159 - -
HCH8g1443 633 Pfam Protein kinase domain 332 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1443 633 SUPERFAMILY Protein kinase-like (PK-like) 328 622 IPR011009 -
HCH8g1443 633 FunFam Leucine-rich repeat receptor-like protein kinase 421 628 - -
HCH8g1443 633 MobiDBLite consensus disorder prediction 229 256 - -
HCH8g1443 633 SMART serkin_6 329 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1443 633 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515(InterPro)
HCH8g1443 633 Pfam Leucine Rich Repeat 167 188 IPR001611 GO:0005515(InterPro)
HCH8g1443 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1443 633 Gene3D Phosphorylase Kinase; domain 1 321 420 - -
HCH8g1443 633 Gene3D Ribonuclease Inhibitor 24 229 IPR032675 -
HCH8g1443 633 ProSiteProfiles Protein kinase domain profile. 329 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1443 633 SUPERFAMILY L domain-like 43 208 - -
HCH8g1443 633 MobiDBLite consensus disorder prediction 229 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g1162 HCH-Chr5:38847866 HCH8g1443 HCH-Chr8:48959387 5.70E-45 dispersed
HCH8g1443 HCH-Chr8:48959387 HCH14g0183 HCH-Chr14:27506950 2.20E-51 dispersed
HCH8g1443 HCH-Chr8:48959387 HCH12g1482 HCH-Chr12:40406051 2.40E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81736 PF00069 Pkinase 1.40E-41 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1443 - - - 0.0