Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1456 ATGAAGAAAGCAACAGCAAGCAGCATAATTCTTCTTTTGGTATCTCTTTCTCTACAACAAGTAGCTCATTTTACATTGGCTCTATCTCTTTCGGATAGTAATCAGGATATGGAGCAATCTGGAACTTCAAGAACTTTCAAGCAAGCAGAAGAGCATGCTCATGAAGTACATTGTTCCAGGAAAAGAAGCAGGACAGCATGGAATATTATTGAGGAGCATCTAATGCCATTTGTGGAGAGGGAAAATTATCAGATTTCAACAAAGTGTAGGCTTCATCCAAACAATGATCTGTATAGAGACCAGGAGGAGCACAAGATTCATTTGGATATAAATGATTGGCAGTGTGGATATTGTAAGAAAAGCTTTCGTGCTGAAAAATTTCTTGAACAACATTTTGACAACAGACACTACAATCTTCTGAATGTTAGCAATGGCAAGTGCATAGCTGATTTATGTGGGGCGTTACACTGTGACCTTAAGATGGATACCAAATTGCACAAGCCCAAATGCAATCCTGCAGCTGCTGTTAGGAACAAGCATTTATGCGAGAGTCTTGCTGATCGCTGTTTTCCTATTAATGAGGGACCGTCAGCAAGCCGACTTCATGAATTATTTCTACACCAATTTTGTGAAGCTCATTCTTGCCCTCGGAAGCAAAAGCCATTTTCTAGAGGGGTGAAGAGGCAAGCAGGTGTATTTTACCTGGCTGCTTCAATATTGACTTTGTTGTTGCTCCCTCTTTTCTATGTCATTGTCTATTTACACTACAGAGAATCGAAAAATGGAATCCAAGTGCTTAGACGAATCTCGAAAGCAGGACGGAAATCAAAGCCCTCATAA 840 40.12 MKKATASSIILLLVSLSLQQVAHFTLALSLSDSNQDMEQSGTSRTFKQAEEHAHEVHCSRKRSRTAWNIIEEHLMPFVERENYQISTKCRLHPNNDLYRDQEEHKIHLDINDWQCGYCKKSFRAEKFLEQHFDNRHYNLLNVSNGKCIADLCGALHCDLKMDTKLHKPKCNPAAAVRNKHLCESLADRCFPINEGPSASRLHELFLHQFCEAHSCPRKQKPFSRGVKRQAGVFYLAASILTLLLLPLFYVIVYLHYRESKNGIQVLRRISKAGRKSKPS 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49008175 49011272 - evm.model.ptg000008l.79 HCH8g1456 550554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1456 279 ProSitePatterns Zinc finger C2H2 type domain signature. 115 136 IPR013087 -
HCH8g1456 279 PANTHER ZINC FINGER PROTEIN-RELATED 3 279 - GO:0000976(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1456 HCH-Chr8:49008175 HCH9g0090 HCH-Chr9:489256 9.50E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34092 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1456 - - - 0.0