Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1477 ATGGCGAATGTCGCCAGCGGTGTCGACGACCGTGTCTTAGCCACGGCTCAGCAGATCGTTAAAAGTCTCAATACCCCAAAAGAGGTTCGTGAAGATATGCTTTTAATTCTTTCCAGTTTTGATAATCGTCTCTCTAGTATTAGTAATATGATCAATAACGATGATTCGAAGACCTGTGATGATAAGCTGGAAGCGGCTGAGAAAGTAATTCTTCGTGGTGACCCTAATTCTGATTTATCAAGAAGGTCTCTTAATTGGGAGGATTCGCCGGAAGAGGCGGCCGAGTATTTATCGGCTGTTGATGATATACTTAGATTGATGGAGGACCTTTCGATTGAGTCGGGGTCCGGTGAGATCGTGGACCGAGCGGAGAATGCGATCCAAATGGCTATGTGTAGGCTTGAGGGTGAATTTCGCCATATTTTGATCCAGAGCACGGTTCCGCTTGATGCTGAGCGGCTTTATGGCTCGATCCGTAGAGTTCATCTCTCGTTCGCGGCGAATGAGTGTGAAATTGATGATGAATTTGAGAGCTTTGATGATGTGGGGCGTAGTTCGGGGCGTTTCCATGAGCGTGGTGCTACTATTGGTGAGGATTTGTGGGTTGATTTGATACACCCTGATGCTGTTGTTGATTTGACTGAGATTGCAGACCGGATGATTCGGTCTGGTTATGAAAAAGAGTGTGTTCAAGTCTATAGTAGCGTCCGTCGTGATGCTTTAGATGAGTGCTTGGCGATTCTTGGGGTTGAGAGGCTTAGCATTGAGGAGGTTCAGAAAAGTGACTGGAAATTCTTGGATGAGAAGATGAAGAAATGGATTCAAGCTGTTAAGATTACCGTTCGGTTGATTTTGGATGGTGAGAGAAGGCTTTGTGATCAGTTTTTTAATGCGGCCAATGAATCAAGGGAGATTTGTTTCAATGAAACAGCAAAAGGGTGTGTAATGCAGCTGCTTAATTTTGGTGAGGCAGTGGCTATTGGGAAGAGGTCACCTGAGAAGCTATTTAGGATCTTGGACATGTATGATGCATTGGCTGGCGTTATACCGGATTTGGAAGCAATGGTTACAGATGAATTTCTGATCAGTGAAGCACATGAAGTGTTGTGTGGACTGGGGGAAGCTGCCACGGGGACTTTTGTAGAATTTGAGAATGCTATTCAGGGTGAAAACTCTAAGAAACCGATGCAAAATGCTGATATTCATCCGCTTATACGATATGTAATGAATTATATGAGGTTGCTCGTTGATTACAGTAAGACACTGAACTCTCTTTTAGAAGATGAGGAAGTCCAAGATCTGCAGAATGATAATGATGATAATTTGCAGTTCGAAAATAAGTCTACTTTAGCTCGTAGATTATTGATGTTGTTATCGTGTTTGGAGTCCAATCTTGTGGAAAAGTCTAGACAGTATGAGGATGGTGCTATGCAATTTATATTTCTAATGAATAATATACTGTACATAGTGAAAAAAGTGAAAGATTCCGATCTGGCCCAGCTTCTCGGTGATGGCTGTATTCGGAGGCACAGTGGCCAAATTCGCCAGTATGAAACAAGTTATCTTAGAGCCTCCTGGAGCAAAGTTTTGTCTTATTTAAAGGATGAAGGTCTTGGTGGGAGCTCAAGCAGTGCCTCAAAGGTAGCTCTGAAGGAAAAGTTCAAAAATTTCAATGCAGCTTTCGAGGAAATCTGCAGGGTCCAGACAGCTTGGAAGGTATCAGATGCTCAACTGCGCGATGAGCTTATAATATCTGTATCCGAAAAGGTGATTCCAGCTTATCGCTCCTTCTTGGGAAGGTTTAGAAATCAGTTAGAGAGTGGAAGGCATTCTGGGAAGTACATAAAGTACACACCAGAGGACTTAGAGAACTCTTTATCAGATTTGTTCGAAGGTTCGCCCGGTATTGCCCATCACCTGCGAAGAAAAAGTACATAG 1938 43.24 MANVASGVDDRVLATAQQIVKSLNTPKEVREDMLLILSSFDNRLSSISNMINNDDSKTCDDKLEAAEKVILRGDPNSDLSRRSLNWEDSPEEAAEYLSAVDDILRLMEDLSIESGSGEIVDRAENAIQMAMCRLEGEFRHILIQSTVPLDAERLYGSIRRVHLSFAANECEIDDEFESFDDVGRSSGRFHERGATIGEDLWVDLIHPDAVVDLTEIADRMIRSGYEKECVQVYSSVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRLILDGERRLCDQFFNAANESREICFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVIPDLEAMVTDEFLISEAHEVLCGLGEAATGTFVEFENAIQGENSKKPMQNADIHPLIRYVMNYMRLLVDYSKTLNSLLEDEEVQDLQNDNDDNLQFENKSTLARRLLMLLSCLESNLVEKSRQYEDGAMQFIFLMNNILYIVKKVKDSDLAQLLGDGCIRRHSGQIRQYETSYLRASWSKVLSYLKDEGLGGSSSSASKVALKEKFKNFNAAFEEICRVQTAWKVSDAQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRHSGKYIKYTPEDLENSLSDLFEGSPGIAHHLRRKST 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49150171 49152108 - evm.model.ptg000008l.58 HCH8g1477 550575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1477 645 Pfam Exo70 exocyst complex subunit C-terminal 271 628 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
HCH8g1477 645 SUPERFAMILY Cullin repeat-like 64 631 IPR016159 -
HCH8g1477 645 FunFam Exocyst subunit Exo70 family protein 79 638 - -
HCH8g1477 645 Gene3D Exocyst complex component Exo70 81 637 - -
HCH8g1477 645 Pfam Exocyst complex component Exo70 N-terminal 63 144 - -
HCH8g1477 645 PANTHER EXOCYST COMPLEX PROTEIN EXO70 39 633 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0115 HCH-Chr3:745956 HCH8g1477 HCH-Chr8:49150171 1.80E-106 dispersed
HCH3g1483 HCH-Chr3:52868124 HCH8g1477 HCH-Chr8:49150171 1.10E-108 dispersed
HCH6g0062 HCH-Chr6:687870 HCH8g1477 HCH-Chr8:49150171 1.50E-116 dispersed
HCH8g1477 HCH-Chr8:49150171 HCH9g0296 HCH-Chr9:1835650 5.00E-120 dispersed
HCH9g0449 HCH-Chr9:2885583 HCH8g1477 HCH-Chr8:49150171 4.00E-93 transposed
HCH3g0443 HCH-Chr3:2826887 HCH8g1477 HCH-Chr8:49150171 7.40E-252 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1477 K07195 - csv:101205970 1035.4