Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g1484 | ATGGAAAACAACAATCAATCCCAATCTTCCCCTTACCCAGCTCCCCAATCGACAGTTCCAGCTCCTCCGTTTCACCATCTTCTCCAACAACAACAACAACAACTTCAAATGTTTTGGTCTTTTCAACGACAAGAAATCGAACAAGTTAACGACTTTAAAAACCACCAACTCCCTTTAGCTCGTATTAAGAAAATCATGAAAGCTGATGAAGATGTCCGTATGATCTCTGCGGAAGCACCCATTTTATTTGCCAAAGCATGTGAGCTTTTCATTCTCGAGCTTACAATCAGGTCTTGGCTTCACGCTGAAGAGAATAAAAGGAGGACATTGCAGAAGAATGATATTGCTGCCGCTATTACTAGGACTGATATCTTTGATTTCTTAGTTGATATTGTTCCAAGAGATGAGATTAAGGACGAGGCTGCTTTAGGAGGAATGGTTGGAGCTACTGCTAGTGGAGTACCCTACTATTATCCTCCCATGGGCCAACCAGCTTCTGGGATGATGATTGGCCGACCCGCCATCGATCCCACCGGCGTTTACGTCCAACCGCCTTCACAGGCTTGGCAATCTGTCTGGCAGACTACTCCTGATGATGCTTCTTATGGGACTGGTGGCCAGGGAAATCTTGATGCCCAGAGCTAA | 645 | 45.27 | MENNNQSQSSPYPAPQSTVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAALGGMVGATASGVPYYYPPMGQPASGMMIGRPAIDPTGVYVQPPSQAWQSVWQTTPDDASYGTGGQGNLDAQS | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 49186037 | 49188691 | - | evm.model.ptg000008l.51 | HCH8g1484 | 550582 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g1484 | 214 | FunFam | Nuclear transcription factor Y subunit gamma | 25 | 134 | - | - | |
| HCH8g1484 | 214 | MobiDBLite | consensus disorder prediction | 194 | 214 | - | - | |
| HCH8g1484 | 214 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| HCH8g1484 | 214 | Gene3D | Histone, subunit A | 24 | 134 | IPR009072 | GO:0046982(InterPro) | |
| HCH8g1484 | 214 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 32 | 145 | IPR050568 | GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER) | |
| HCH8g1484 | 214 | SUPERFAMILY | Histone-fold | 27 | 128 | IPR009072 | GO:0046982(InterPro) | |
| HCH8g1484 | 214 | Pfam | Core histone H2A/H2B/H3/H4 | 43 | 119 | IPR007125 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH6g1213 | HCH-Chr6:46570790 | HCH8g1484 | HCH-Chr8:49186037 | 2.00E-22 | dispersed | |
| HCH8g0128 | HCH-Chr8:5282909 | HCH8g1484 | HCH-Chr8:49186037 | 6.50E-50 | transposed | |
| HCH3g0451 | HCH-Chr3:2867793 | HCH8g1484 | HCH-Chr8:49186037 | 1.10E-85 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34095 | PF00808 | CBFD_NFYB_HMF | 2.10E-17 | CL0012 | HCH | TF |
Pathway information