Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1484 ATGGAAAACAACAATCAATCCCAATCTTCCCCTTACCCAGCTCCCCAATCGACAGTTCCAGCTCCTCCGTTTCACCATCTTCTCCAACAACAACAACAACAACTTCAAATGTTTTGGTCTTTTCAACGACAAGAAATCGAACAAGTTAACGACTTTAAAAACCACCAACTCCCTTTAGCTCGTATTAAGAAAATCATGAAAGCTGATGAAGATGTCCGTATGATCTCTGCGGAAGCACCCATTTTATTTGCCAAAGCATGTGAGCTTTTCATTCTCGAGCTTACAATCAGGTCTTGGCTTCACGCTGAAGAGAATAAAAGGAGGACATTGCAGAAGAATGATATTGCTGCCGCTATTACTAGGACTGATATCTTTGATTTCTTAGTTGATATTGTTCCAAGAGATGAGATTAAGGACGAGGCTGCTTTAGGAGGAATGGTTGGAGCTACTGCTAGTGGAGTACCCTACTATTATCCTCCCATGGGCCAACCAGCTTCTGGGATGATGATTGGCCGACCCGCCATCGATCCCACCGGCGTTTACGTCCAACCGCCTTCACAGGCTTGGCAATCTGTCTGGCAGACTACTCCTGATGATGCTTCTTATGGGACTGGTGGCCAGGGAAATCTTGATGCCCAGAGCTAA 645 45.27 MENNNQSQSSPYPAPQSTVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAALGGMVGATASGVPYYYPPMGQPASGMMIGRPAIDPTGVYVQPPSQAWQSVWQTTPDDASYGTGGQGNLDAQS 214
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 49186037 49188691 - evm.model.ptg000008l.51 HCH8g1484 550582
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1484 214 FunFam Nuclear transcription factor Y subunit gamma 25 134 - -
HCH8g1484 214 MobiDBLite consensus disorder prediction 194 214 - -
HCH8g1484 214 MobiDBLite consensus disorder prediction 1 22 - -
HCH8g1484 214 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982(InterPro)
HCH8g1484 214 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 32 145 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
HCH8g1484 214 SUPERFAMILY Histone-fold 27 128 IPR009072 GO:0046982(InterPro)
HCH8g1484 214 Pfam Core histone H2A/H2B/H3/H4 43 119 IPR007125 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1213 HCH-Chr6:46570790 HCH8g1484 HCH-Chr8:49186037 2.00E-22 dispersed
HCH8g0128 HCH-Chr8:5282909 HCH8g1484 HCH-Chr8:49186037 6.50E-50 transposed
HCH3g0451 HCH-Chr3:2867793 HCH8g1484 HCH-Chr8:49186037 1.10E-85 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34095 PF00808 CBFD_NFYB_HMF 2.10E-17 CL0012 HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1484 - - - 0.0