Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1514 ATGTCTGACGATGCAATTTTCAATGCTAACAACCCTTTCCTTCCACTTCCACCTGAATCTTTTCACTCTTATTCTTCTTCTATTCACCCAACACCTAATTCTTCAACAGTCTTAGATAAGCTTGAAAGTGAAGTCATGCCCATGCCCATGAACCATAAGAGAAAGACAAGAGATGGATCCTCATTATTAACTTATGCTCATTCACAAAGGAAATACAACAATGGTAGGAAAGAGGGAGGATTGAAAAAGCTCAAAACTGAAAAGAAATGTTACCAAAAAGTCCCTGATGAAGCTCCAGCACCGGGATACATACATGTAAGAGCGAGGAGGGGTCAGGCAACAGATACTCACAGCCTTGCTGAAAGGATAAGAAGAGAGAAAATCAGTGAGAGGATGAAGATTTTGCAAACACTTGTTCCTGGCTGTGACAAGGTAACTGGGAAGGCTCTAATGTTGGATGAGATTATCAATTATGTCCAGTCCTTGCAAAATCAAGTTGAGTTCCTGTCAATGAAGCTTGCTTCAGCTAACCCGGTTCTTTACAACTTTGGAATGGATTTAGATATATACGCCGGTGGACCACAGGTAATGAGTGGCATGTGCATGGACATGGTATCGCAGGCACAATTGCCTAATTATATGCCTATTAGCAACACCATTCAGCCCACAGCCAGTGCAGCAGCTCCCACCATCTTAACGGCAGGAAATAGCAGCTTTATTCCTCAGCTGGACAATTCATCTTCACTTTTACTTGAGCAGGAGCAGCTGCTGCAGCATGAGATTCAGAACACTTCTCTGCTAAACTTGGATGGTGTTAGCCTTGGCATGTTGTTGGATAGTGAAGAAGAGAGACAAAACCTTCAAAATTCAACTGGGTCGATTAGCATTACCAACAACTCCTATTTCTTTCCTTGA 915 42.3 MSDDAIFNANNPFLPLPPESFHSYSSSIHPTPNSSTVLDKLESEVMPMPMNHKRKTRDGSSLLTYAHSQRKYNNGRKEGGLKKLKTEKKCYQKVPDEAPAPGYIHVRARRGQATDTHSLAERIRREKISERMKILQTLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASANPVLYNFGMDLDIYAGGPQVMSGMCMDMVSQAQLPNYMPISNTIQPTASAAAPTILTAGNSSFIPQLDNSSSLLLEQEQLLQHEIQNTSLLNLDGVSLGMLLDSEEERQNLQNSTGSISITNNSYFFP 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49298340 49299839 - evm.model.ptg000008l.21 HCH8g1514 550612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1514 304 FunFam Basic helix-loop-helix transcription factor 109 182 - -
HCH8g1514 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 110 178 IPR036638 GO:0046983(InterPro)
HCH8g1514 304 SMART finulus 118 168 IPR011598 GO:0046983(InterPro)
HCH8g1514 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 162 IPR011598 GO:0046983(InterPro)
HCH8g1514 304 CDD bHLH_AtBPE_like 102 187 - -
HCH8g1514 304 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 51 227 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
HCH8g1514 304 Gene3D - 109 180 IPR036638 GO:0046983(InterPro)
HCH8g1514 304 Pfam Helix-loop-helix DNA-binding domain 116 163 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0459 HCH-Chr8:40028731 HCH8g1514 HCH-Chr8:49298340 2.10E-10 dispersed
HCH8g0922 HCH-Chr8:45517757 HCH8g1514 HCH-Chr8:49298340 4.50E-16 dispersed
HCH8g1163 HCH-Chr8:47231272 HCH8g1514 HCH-Chr8:49298340 8.10E-27 dispersed
HCH8g1341 HCH-Chr8:48313935 HCH8g1514 HCH-Chr8:49298340 5.30E-29 dispersed
HCH8g1514 HCH-Chr8:49298340 HCH9g0370 HCH-Chr9:2337266 3.80E-25 dispersed
HCH3g0474 HCH-Chr3:3051302 HCH8g1514 HCH-Chr8:49298340 2.60E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34098 PF00010 HLH 3.80E-07 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1514 - - - 0.0