Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1518 ATGGAAGAGAAAGAGAAAGAGAAGCCTTTTTCTTTTTCTATTTCTACTACGCCTTCCAACCAATACCATCATCAGGAAGAAGAAGAAGAAGAAGAAGAAGAACGCAAGGATTCGGAATTTGATCTCCGATCCGACGATCCTCAACTCTCTCCACTCCCCCACACTGTTACTTCCCGTGTGTTATACATGTTAGGAGATATTGCTTCAGGTCCTGCTTTTAGGTTCTCTCAATGGATTGAATTGGTCCGTAAACGTAATGCCAGATATCGCGCCTCTCCCTTCCTTCTCCCCTCTGGTGGGGAGGAAGACCTTCTTACTGAATCAACAACAACAACCACTCCTCCTCCTTCTCCTCATCACCATTCCACTGAAACCTGTTTATGGGAAAGACTTGCTAACGCTTCCATGTTGGACATTGATTCTAATTCTTTTTCCTGGGACTCCCTTTTGTCTCTTCACCGCACCGAACACAGTACTACTACCGATCAACTTCATTCTGAAGATGACATCAATAAACCCCTTGAGGTCACTGTTAATTCTGGCGGAGTTGTTTTCTTTGCCCTCTTCAATCACCTTCCTCTTCCTAATGACCCTCATTCCCCCAAGGAAGCTGCTGCTGTTATTAAGATATCATCTTCAAGAATGGCTACGCAATCTGAACGCATGGGCTATGAATTTGCTAAGTGGCTTGGTGTTCAAACTCCACAGGCTCGAGTCATACATAATTCTAGCATCGAGTGGCTTCAGATTAAAGAAGCTGCAGAGAAAGCAAGACATGCCGCCAGTTTGGAGGGTGATGAGGTTGGTGAAATGACTTGTTGTGAACTACTGGAAGCTCTTGAATTTAGCAGATGCCTCTTTCTGATGAGTTACGTACATGGATCTCCTTTGTTGGAAAGCTTAAATGCATTTGAATCACGGGAAACAGCAGAAAAATTAGCAGCCGCTATTGGAAGGATTTTATTGTTGGACCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCGTCTTCTTCGTTGGCGTGGAAATGCTGCAAACTTACTCTTGGCTAATAAAATGGCATGCGCTAGTATGAATGCACTTGAGGAAGCCTTTGATTCTGCAATTAAGAAATGTAGACCAAGGGTTGTTACAGCTCTACAAAACGAAAGAAGGGCAACTTCAGTAGATAGTAGACCAAATCCTAATTCAGGGTTGGTAGCAGAAACCTCTGACCTTTGCAATAGCAAGGAGTCTCCAAAATCTTGTAATGCGAGTGTAAAAAGTCAAACATCAGATGAACCAACGCCTTGTGAGCTTAACATTGTGGCTATTGACTCTGGTGTTCCTCGCCGGCCTCCTGCTGGAAAGCGTGCTAATGATCACTCAATTTATCCAAAGTTAGTTGAGTTGCTACTTAATAGTTCTGAGTTTTCCGCTGATCTATTACATGACATTACAGGAGGGAAATTAGGGTTTCCTTCATTAGCTGATGCCAACTCAAATACTGATATACAGTTCACAGATATGACTTCAGTTGTCCATGAATTTCGATATGGGTTCCGTGCTGCTCTCAGGGATCTGCAAGGATTTCACATATTTCTACTTACACTTCACCAGAAGTTGGACAACTCATTACGAGCATTTTTGAATATCATTAATAGATTTTCCTCAGGGGAGTCTGATAAAGAGGATTTGGCAGTTCCTGAGTATCCTCTCCCGGCTTCTGCCAGTAGCCATTGTCCATCTCCACGTGGTAAGGACCGAGCCTTTAATGACAGTAATATGGATGTTAGTGATTCAGCTCCAAGGACATCCTCCTCAGGAAATAAAGAAGGCTCTGACTCATCTTCTCCTTTTTCACGAGATAGCTCACAAGGAAAGTTATATAAAGGAAGTGGAGAGCCCATTCACAGCCTTCGTTTGACTGCAAAGCTTCGAGACTTTCATAAATTTGCCAAGGTGGATGCTGAATCGAATAAGGAATTGGATTCATGGAATGAAATGCTAAAGTATGAAGCTGTTAAACTTTGCCAGGAGAATAATTTTAACACGGGGTTTTTTGAGGGCAGCGATAGCCATGGAGTTGTTGATGCTTATGAATTAAAAATAAGGCTTGAGCACATTCTTGAAAGGATTGCACTAATATCAGAGGCTGCAAATACAGAAAGGCCCTCCTCAGTTACAGCTACATTGTTTATAGGTGGTGCCTTGGCTGCAAGATCTATCTACACACTTCAACATCTAGGAATCACTCATATTTTATGTCTCTGCTCGAATGAAATTGGACAGTCAGATTCTCAGTTTCCCGATCTCTTTGAATACAAAAATTTTTCAATAAGTGATGATGAAGATACAAACATCAGCAGCATCTTTGATGAAGCTTCTGATTTTATTGATCATGTTGAGGAAAAAGGTGGGAAGGTATTGGTTCATTGCTTTGAAGGGAGAAGTAGAAGTGCCACATTGGTACTTGCCTACTTGATGACCAGGAAGAAATATACACTGTTAAAAGCATGGAACGCTTTGAAACGAGTTCACCGCCGAGCTCAGCCCAATGACGGGTTTGCAAAAATATTACTAGAACTTGATCGTAGAATACATGGAAAAGTTTCAATGGAGTGGCAATCACGGAAACCGACAATGAAAGTTTGCCCGATTTGCGGGAAAAATGCTGGTCTGAGTAGCAGCTCACTGAAGCTTCATCTGCAAAAATCACACAAGAAGCTGTCGTCAGGGAGTGTAGATAGTGCAATGACTATGGAAATACAGAAGGCACTGACAGCACTGAAAATTAGCCGTGGTGGGAGCGTAAGCCCCACACAGGCAATCTCTTTTGATCTTGGATGA 2829 42.45 MEEKEKEKPFSFSISTTPSNQYHHQEEEEEEEEERKDSEFDLRSDDPQLSPLPHTVTSRVLYMLGDIASGPAFRFSQWIELVRKRNARYRASPFLLPSGGEEDLLTESTTTTTPPPSPHHHSTETCLWERLANASMLDIDSNSFSWDSLLSLHRTEHSTTTDQLHSEDDINKPLEVTVNSGGVVFFALFNHLPLPNDPHSPKEAAAVIKISSSRMATQSERMGYEFAKWLGVQTPQARVIHNSSIEWLQIKEAAEKARHAASLEGDEVGEMTCCELLEALEFSRCLFLMSYVHGSPLLESLNAFESRETAEKLAAAIGRILLLDLVIRNEDRLPCRLLRWRGNAANLLLANKMACASMNALEEAFDSAIKKCRPRVVTALQNERRATSVDSRPNPNSGLVAETSDLCNSKESPKSCNASVKSQTSDEPTPCELNIVAIDSGVPRRPPAGKRANDHSIYPKLVELLLNSSEFSADLLHDITGGKLGFPSLADANSNTDIQFTDMTSVVHEFRYGFRAALRDLQGFHIFLLTLHQKLDNSLRAFLNIINRFSSGESDKEDLAVPEYPLPASASSHCPSPRGKDRAFNDSNMDVSDSAPRTSSSGNKEGSDSSSPFSRDSSQGKLYKGSGEPIHSLRLTAKLRDFHKFAKVDAESNKELDSWNEMLKYEAVKLCQENNFNTGFFEGSDSHGVVDAYELKIRLEHILERIALISEAANTERPSSVTATLFIGGALAARSIYTLQHLGITHILCLCSNEIGQSDSQFPDLFEYKNFSISDDEDTNISSIFDEASDFIDHVEEKGGKVLVHCFEGRSRSATLVLAYLMTRKKYTLLKAWNALKRVHRRAQPNDGFAKILLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQAISFDLG 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49308505 49312969 + evm.model.ptg000008l.17 HCH8g1518 550616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1518 942 ProSiteProfiles Dual specificity protein phosphatase domain profile. 717 862 IPR020422 GO:0006470(InterPro)
HCH8g1518 942 MobiDBLite consensus disorder prediction 1 53 - -
HCH8g1518 942 Pfam Dual specificity phosphatase, catalytic domain 728 858 IPR000340 GO:0016311(InterPro)
HCH8g1518 942 SUPERFAMILY Protein kinase-like (PK-like) 77 455 IPR011009 -
HCH8g1518 942 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 26 936 IPR035010 GO:0004721(InterPro)|GO:0009737(InterPro)|GO:0043622(InterPro)
HCH8g1518 942 SMART dsp_5 717 859 IPR020422 GO:0006470(InterPro)
HCH8g1518 942 MobiDBLite consensus disorder prediction 588 621 - -
HCH8g1518 942 Pfam Actin-fragmin kinase, catalytic 126 376 IPR015275 -
HCH8g1518 942 MobiDBLite consensus disorder prediction 566 627 - -
HCH8g1518 942 Gene3D Protein tyrosine phosphatase superfamily 696 863 IPR029021 -
HCH8g1518 942 CDD DSP 718 855 - -
HCH8g1518 942 ProSitePatterns Tyrosine specific protein phosphatases active site. 804 814 IPR016130 GO:0016311(InterPro)
HCH8g1518 942 Gene3D - 297 442 IPR036940 -
HCH8g1518 942 MobiDBLite consensus disorder prediction 96 123 - -
HCH8g1518 942 FunFam Dual specificity protein phosphatase PHS1 689 863 - -
HCH8g1518 942 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 782 838 IPR000387 GO:0016311(InterPro)
HCH8g1518 942 MobiDBLite consensus disorder prediction 103 120 - -
HCH8g1518 942 MobiDBLite consensus disorder prediction 383 428 - -
HCH8g1518 942 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 717 861 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1518 K14165 - - csv:101220184 1379.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH12g1470 . 4 325 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.5e-123 439.5
HCH8g1518 . 36 928 Protein tyrosine phosphatase (PTP) family AT5G23720 63.3 2.7e-308 1054.7
HCH6g1620 . 25 172 Protein tyrosine phosphatase (PTP) family AT3G06110 56.8 2.6e-44 175.3
HCH7g0076 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 75.7 3.9e-70 261.2
HCH1g0714 . 101 378 Protein tyrosine phosphatase (PTP) family AT3G52180 71.6 2.8e-115 411.8
HCH1g0316 . 7 281 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 3.7e-115 411.4
HCH9g0145 . 143 590 Protein tyrosine phosphatase (PTP) family AT3G01510 68.3 3.8e-191 664.5
HCH2g0875 . 64 225 Protein tyrosine phosphatase (PTP) family AT2G32960 66.3 1.7e-71 266.2
HCH7g0082 . 43 226 Protein tyrosine phosphatase (PTP) family AT2G32960 67.0 2.8e-69 258.8
HCH6g1038 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 1.1e-97 353.6
HCH10g0513 . 18 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.0 5.0e-79 291.6
HCH10g0513 . 28 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.1e-46 180.3
HCH2g0875 . 62 225 Protein tyrosine phosphatase (PTP) family AT4G03960 76.8 1.7e-74 275.8
HCH7g0082 . 38 226 Protein tyrosine phosphatase (PTP) family AT4G03960 63.0 3.8e-66 248.1
HCH8g0272 . 12 167 Protein tyrosine phosphatase (PTP) family AT4G03960 59.1 1.4e-52 203.0
HCH8g0272 . 1 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 8.9e-79 290.0
HCH2g0875 . 61 209 Protein tyrosine phosphatase (PTP) family AT3G02800 64.4 2.3e-55 212.2
HCH7g0082 . 32 223 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 9.2e-52 200.3
HCH1g0486 . 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.1 8.1e-64 242.3
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH7g0674 . 8 589 Protein tyrosine phosphatase (PTP) family AT3G19420 67.6 9.4e-225 776.5
HCH14g0309 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.2e-199 691.0
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH2g1250 . 60 240 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 5.1e-71 264.6
HCH6g1102 . 12 322 Protein tyrosine phosphatase (PTP) family AT2G35320 62.4 1.5e-114 409.5
HCH9g0750 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.8 1.1e-279 959.1
HCH9g0750 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.9 4.5e-257 884.0
HCH9g0750 . 78 673 Protein tyrosine phosphatase (PTP) family AT5G28210 55.2 1.3e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009525 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 2 1 0 1 1 1 31