Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g1520 | ATGGCCTCCTCTGAGGTTTCCCTTTCCCTCAAAGGGAATTCCAACGCTCCACCACCACCGGACACCTTCACCGATCATAATCATGATTCTATTTCTAGGAAAGAAAACCCTCTCTCCCCCAAAGATGCTGAAATCGCTCTCTACACGGAGCTTTGGAATGCTTGTGCTGGTCCTCTCGTTTCTGTCCCTCGCCAAAACGACCGTGTTTTCTATTTCCCTCACGGACACATCGAGCAGGTCGAAGCTTCCACAAATCAAGTCGCAGACCAGCAGATGCCTGTTTATAACCTTCCTTCCAAGATCCTTTGCCGCGTCATTAATGTTAATTTAAAGGCTGAACCCGACACCGACGAGGTTTTTGCCCAAATCACTTTGCTTCCTGAGCCTAATCAAGATGAGAATGCTTTGGAGAAAGATCCCCCTCCCCCTCCCCCACGAAGGTTTCATGTCCATTCCTTTTGCAAGACTCTTACTGCCTCTGACACCAGTACTCATGGTGGATTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTACCACCTCTGGACATGTCACGACAGCCTCCTACTCAGGAATTGGTCGCCAAGGATTTGCATGGAAGTGAATGGCGTTTTCGTCATATATTTCGGGGTCAACCCCGTAGGCATTTGCTTCAAAGTGGTTGGAGCGTTTTTGTGAGCTCTAAAAGACTGGTTGCTGGAGATGCTTTTATATTCCTCAGGGGTGAGAATGGCGAACTACGTGTAGGTGTGAGGCGTGCTATGAGACAACATGGTAATGTACCGTCATCAGTCATATCTAGCCATAGCATGCATCTTGGTGTTCTTGCGACTGCCTGGCATGCCATTTCTACTGGCACAATGTTCACTGTCTATTACAAGCCTAGGACAAGCCCATCTGAATTCATTGTTCCGTATGACCACTATATGGAGTCTATTAAGAAAAACTACACGATAGGAATGAGGTTCAAAATGAGATTTGAAGGTGAAGAAGCTCCTGAACAGAGATTCACTGGTACTATAATTGGATGTGAAGATGCTGATCCCAAGAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGATGAGACTTCAAGTATTTCTCGTCCTGAGAGAGTGTCACCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCCGCACTAAATCCCCTTCCAATGACTAGACCTAAAAGGCCTCGGTCAAACATGGTGCCTACATCCCCTGATTCTTCTGTTCTTACACGGGAAGGCTCATCAAGAGTGACCACAGACCCTTCACCAGCTAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGATGGAAATGAGCCTGATGCAGCGGAAAAGTCTGTTATGTGGCCTCCCTCGCTTGATGATGAGAAGATTGATGTGGTTTCTACATCCAAGAAACATGGAGCAGATGGCTGGATGTCATCGGGAAGGAGTGAGCCAACCTATGCGGATCTTTTATCGGGTTTTGGAACGAACACTGATTCCTCCCGCGGTATCCGAGCCACCTTGGCTGATCCAGCAGTAGTAGCTACTAATTCAATTAGAAAGCATGTAATGGATCAAGATGGAAAGTTTAACTTCCTTGGTAGCTCATGGTCTGTCATGCCTTCTGGTCTCTCGCTCAATCTGGTGGACTCTAGTCAGAATGTTCATGTTCAGGGCGGTGATTTGCCTTACCAAGTGAGAGGAAATGCCAATTTTAATGGCTTTCTTGACCATTCCATGGCCCAATGTCATAGAATGGAACAGCCACATGGAAACTGGTTGATGCCTCCACCTCCCACCCATTTTGATTATCCAGTTCCTTCAACTGAGTTGATGTCAAAACCAATGTTATTTCAGAACCAGGATGCTGTGAAGCCCCGGGAGGGAAACTGTAAACTTTTTGGCATCTCTCTCCTTAAAGACCCTGTTATTCTTCCAGACACTGCAGCGTCCAATAGAAATATGATGAACGAGGCAGATATTATGCATCAGCTCAATACCCATCAATTTCATTCTGACTTCAAGTCTGAACTATCAAGAGGTTCAAAGTTAACTGAAAAATCCCTTGCTTTCAACGAGCCTGATAAATCGCAGCAAACTTGTTCGCAGAATTCAAAGGATGTGCCAAGCAAATCACAGGGTGGTTCAACAAGGAGCTGTACAAAGGTCCACAAGCAGGGCATTGCACTTGGAAGGTCAGTTGATCTAAGCAAGTTCAACAATTATGATGAATTAGTTACTGAATTGGATCAACTGTTTGAATTTGGTGGCGAGTTGATGACTCCCAAAAAGAATTGGTTGATTGTATATACGGACGATGAAGGTGATATGATGCTTGTTGGAGATGACCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATATTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCCAGGGTCCTTAAATTTGAAAGGTGAGGAGAATCCATTGGTTGGTGAAGGGGAAGAAGCAAAAGATGTGAAAGGTCAGGCAGTAGCTTCCATGTCGACACCAGAAAGTTGTTAG | 2565 | 45.58 | MASSEVSLSLKGNSNAPPPPDTFTDHNHDSISRKENPLSPKDAEIALYTELWNACAGPLVSVPRQNDRVFYFPHGHIEQVEASTNQVADQQMPVYNLPSKILCRVINVNLKAEPDTDEVFAQITLLPEPNQDENALEKDPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDHYMESIKKNYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSSISRPERVSPWKIEPALAPPALNPLPMTRPKRPRSNMVPTSPDSSVLTREGSSRVTTDPSPASAFTRVLQGQEFSTLRGNFADGNEPDAAEKSVMWPPSLDDEKIDVVSTSKKHGADGWMSSGRSEPTYADLLSGFGTNTDSSRGIRATLADPAVVATNSIRKHVMDQDGKFNFLGSSWSVMPSGLSLNLVDSSQNVHVQGGDLPYQVRGNANFNGFLDHSMAQCHRMEQPHGNWLMPPPPTHFDYPVPSTELMSKPMLFQNQDAVKPREGNCKLFGISLLKDPVILPDTAASNRNMMNEADIMHQLNTHQFHSDFKSELSRGSKLTEKSLAFNEPDKSQQTCSQNSKDVPSKSQGGSTRSCTKVHKQGIALGRSVDLSKFNNYDELVTELDQLFEFGGELMTPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPGSLNLKGEENPLVGEGEEAKDVKGQAVASMSTPESC | 854 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 49320730 | 49324622 | - | evm.model.ptg000008l.15 | HCH8g1520 | 550618 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g1520 | 854 | MobiDBLite | consensus disorder prediction | 387 | 429 | - | - | |
HCH8g1520 | 854 | SUPERFAMILY | DNA-binding pseudobarrel domain | 150 | 282 | IPR015300 | - | |
HCH8g1520 | 854 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
HCH8g1520 | 854 | Gene3D | - | 316 | 386 | - | - | |
HCH8g1520 | 854 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
HCH8g1520 | 854 | MobiDBLite | consensus disorder prediction | 819 | 854 | - | - | |
HCH8g1520 | 854 | Pfam | Auxin response factor | 279 | 361 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
HCH8g1520 | 854 | SMART | B3_2 | 153 | 255 | IPR003340 | GO:0003677(InterPro) | |
HCH8g1520 | 854 | Pfam | AUX/IAA family | 712 | 816 | IPR033389 | - | |
HCH8g1520 | 854 | Pfam | B3 DNA binding domain | 153 | 254 | IPR003340 | GO:0003677(InterPro) | |
HCH8g1520 | 854 | CDD | B3_DNA | 151 | 253 | IPR003340 | GO:0003677(InterPro) | |
HCH8g1520 | 854 | SUPERFAMILY | CAD & PB1 domains | 724 | 805 | - | - | |
HCH8g1520 | 854 | Gene3D | - | 150 | 255 | IPR015300 | - | |
HCH8g1520 | 854 | MobiDBLite | consensus disorder prediction | 700 | 730 | - | - | |
HCH8g1520 | 854 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 46 | 818 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
HCH8g1520 | 854 | FunFam | Auxin response factor | 723 | 817 | - | - | |
HCH8g1520 | 854 | ProSiteProfiles | B3 DNA-binding domain profile. | 153 | 255 | IPR003340 | GO:0003677(InterPro) | |
HCH8g1520 | 854 | MobiDBLite | consensus disorder prediction | 402 | 429 | - | - | |
HCH8g1520 | 854 | FunFam | Auxin response factor | 316 | 388 | - | - | |
HCH8g1520 | 854 | Gene3D | - | 724 | 817 | - | - | |
HCH8g1520 | 854 | ProSiteProfiles | PB1 domain profile. | 728 | 812 | IPR053793 | - | |
HCH8g1520 | 854 | FunFam | Auxin response factor | 151 | 255 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g1100 | HCH-Chr14:37927991 | HCH8g1520 | HCH-Chr8:49320730 | 1.60E-106 | dispersed | |
HCH1g0159 | HCH-Chr1:12427444 | HCH8g1520 | HCH-Chr8:49320730 | 1.50E-175 | dispersed | |
HCH2g1164 | HCH-Chr2:54214162 | HCH8g1520 | HCH-Chr8:49320730 | 6.90E-135 | dispersed | |
HCH6g1284 | HCH-Chr6:47092980 | HCH8g1520 | HCH-Chr8:49320730 | 2.10E-156 | dispersed | |
HCH8g1520 | HCH-Chr8:49320730 | HCH9g0585 | HCH-Chr9:3937229 | 7.20E-66 | dispersed | |
HCH8g1520 | HCH-Chr8:49320730 | HCH3g0834 | HCH-Chr3:6324251 | 1.60E-110 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34099 | PF02362 | B3 | 6.80E-21 | CL0405 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH8g1520 | K14486 | - | csv:101206845 | 1421.76 |