Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1520 ATGGCCTCCTCTGAGGTTTCCCTTTCCCTCAAAGGGAATTCCAACGCTCCACCACCACCGGACACCTTCACCGATCATAATCATGATTCTATTTCTAGGAAAGAAAACCCTCTCTCCCCCAAAGATGCTGAAATCGCTCTCTACACGGAGCTTTGGAATGCTTGTGCTGGTCCTCTCGTTTCTGTCCCTCGCCAAAACGACCGTGTTTTCTATTTCCCTCACGGACACATCGAGCAGGTCGAAGCTTCCACAAATCAAGTCGCAGACCAGCAGATGCCTGTTTATAACCTTCCTTCCAAGATCCTTTGCCGCGTCATTAATGTTAATTTAAAGGCTGAACCCGACACCGACGAGGTTTTTGCCCAAATCACTTTGCTTCCTGAGCCTAATCAAGATGAGAATGCTTTGGAGAAAGATCCCCCTCCCCCTCCCCCACGAAGGTTTCATGTCCATTCCTTTTGCAAGACTCTTACTGCCTCTGACACCAGTACTCATGGTGGATTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTACCACCTCTGGACATGTCACGACAGCCTCCTACTCAGGAATTGGTCGCCAAGGATTTGCATGGAAGTGAATGGCGTTTTCGTCATATATTTCGGGGTCAACCCCGTAGGCATTTGCTTCAAAGTGGTTGGAGCGTTTTTGTGAGCTCTAAAAGACTGGTTGCTGGAGATGCTTTTATATTCCTCAGGGGTGAGAATGGCGAACTACGTGTAGGTGTGAGGCGTGCTATGAGACAACATGGTAATGTACCGTCATCAGTCATATCTAGCCATAGCATGCATCTTGGTGTTCTTGCGACTGCCTGGCATGCCATTTCTACTGGCACAATGTTCACTGTCTATTACAAGCCTAGGACAAGCCCATCTGAATTCATTGTTCCGTATGACCACTATATGGAGTCTATTAAGAAAAACTACACGATAGGAATGAGGTTCAAAATGAGATTTGAAGGTGAAGAAGCTCCTGAACAGAGATTCACTGGTACTATAATTGGATGTGAAGATGCTGATCCCAAGAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGATGAGACTTCAAGTATTTCTCGTCCTGAGAGAGTGTCACCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCCGCACTAAATCCCCTTCCAATGACTAGACCTAAAAGGCCTCGGTCAAACATGGTGCCTACATCCCCTGATTCTTCTGTTCTTACACGGGAAGGCTCATCAAGAGTGACCACAGACCCTTCACCAGCTAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGATGGAAATGAGCCTGATGCAGCGGAAAAGTCTGTTATGTGGCCTCCCTCGCTTGATGATGAGAAGATTGATGTGGTTTCTACATCCAAGAAACATGGAGCAGATGGCTGGATGTCATCGGGAAGGAGTGAGCCAACCTATGCGGATCTTTTATCGGGTTTTGGAACGAACACTGATTCCTCCCGCGGTATCCGAGCCACCTTGGCTGATCCAGCAGTAGTAGCTACTAATTCAATTAGAAAGCATGTAATGGATCAAGATGGAAAGTTTAACTTCCTTGGTAGCTCATGGTCTGTCATGCCTTCTGGTCTCTCGCTCAATCTGGTGGACTCTAGTCAGAATGTTCATGTTCAGGGCGGTGATTTGCCTTACCAAGTGAGAGGAAATGCCAATTTTAATGGCTTTCTTGACCATTCCATGGCCCAATGTCATAGAATGGAACAGCCACATGGAAACTGGTTGATGCCTCCACCTCCCACCCATTTTGATTATCCAGTTCCTTCAACTGAGTTGATGTCAAAACCAATGTTATTTCAGAACCAGGATGCTGTGAAGCCCCGGGAGGGAAACTGTAAACTTTTTGGCATCTCTCTCCTTAAAGACCCTGTTATTCTTCCAGACACTGCAGCGTCCAATAGAAATATGATGAACGAGGCAGATATTATGCATCAGCTCAATACCCATCAATTTCATTCTGACTTCAAGTCTGAACTATCAAGAGGTTCAAAGTTAACTGAAAAATCCCTTGCTTTCAACGAGCCTGATAAATCGCAGCAAACTTGTTCGCAGAATTCAAAGGATGTGCCAAGCAAATCACAGGGTGGTTCAACAAGGAGCTGTACAAAGGTCCACAAGCAGGGCATTGCACTTGGAAGGTCAGTTGATCTAAGCAAGTTCAACAATTATGATGAATTAGTTACTGAATTGGATCAACTGTTTGAATTTGGTGGCGAGTTGATGACTCCCAAAAAGAATTGGTTGATTGTATATACGGACGATGAAGGTGATATGATGCTTGTTGGAGATGACCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATATTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCCAGGGTCCTTAAATTTGAAAGGTGAGGAGAATCCATTGGTTGGTGAAGGGGAAGAAGCAAAAGATGTGAAAGGTCAGGCAGTAGCTTCCATGTCGACACCAGAAAGTTGTTAG 2565 45.58 MASSEVSLSLKGNSNAPPPPDTFTDHNHDSISRKENPLSPKDAEIALYTELWNACAGPLVSVPRQNDRVFYFPHGHIEQVEASTNQVADQQMPVYNLPSKILCRVINVNLKAEPDTDEVFAQITLLPEPNQDENALEKDPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDHYMESIKKNYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSSISRPERVSPWKIEPALAPPALNPLPMTRPKRPRSNMVPTSPDSSVLTREGSSRVTTDPSPASAFTRVLQGQEFSTLRGNFADGNEPDAAEKSVMWPPSLDDEKIDVVSTSKKHGADGWMSSGRSEPTYADLLSGFGTNTDSSRGIRATLADPAVVATNSIRKHVMDQDGKFNFLGSSWSVMPSGLSLNLVDSSQNVHVQGGDLPYQVRGNANFNGFLDHSMAQCHRMEQPHGNWLMPPPPTHFDYPVPSTELMSKPMLFQNQDAVKPREGNCKLFGISLLKDPVILPDTAASNRNMMNEADIMHQLNTHQFHSDFKSELSRGSKLTEKSLAFNEPDKSQQTCSQNSKDVPSKSQGGSTRSCTKVHKQGIALGRSVDLSKFNNYDELVTELDQLFEFGGELMTPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPGSLNLKGEENPLVGEGEEAKDVKGQAVASMSTPESC 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49320730 49324622 - evm.model.ptg000008l.15 HCH8g1520 550618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1520 854 MobiDBLite consensus disorder prediction 387 429 - -
HCH8g1520 854 SUPERFAMILY DNA-binding pseudobarrel domain 150 282 IPR015300 -
HCH8g1520 854 MobiDBLite consensus disorder prediction 1 21 - -
HCH8g1520 854 Gene3D - 316 386 - -
HCH8g1520 854 MobiDBLite consensus disorder prediction 1 38 - -
HCH8g1520 854 MobiDBLite consensus disorder prediction 819 854 - -
HCH8g1520 854 Pfam Auxin response factor 279 361 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH8g1520 854 SMART B3_2 153 255 IPR003340 GO:0003677(InterPro)
HCH8g1520 854 Pfam AUX/IAA family 712 816 IPR033389 -
HCH8g1520 854 Pfam B3 DNA binding domain 153 254 IPR003340 GO:0003677(InterPro)
HCH8g1520 854 CDD B3_DNA 151 253 IPR003340 GO:0003677(InterPro)
HCH8g1520 854 SUPERFAMILY CAD & PB1 domains 724 805 - -
HCH8g1520 854 Gene3D - 150 255 IPR015300 -
HCH8g1520 854 MobiDBLite consensus disorder prediction 700 730 - -
HCH8g1520 854 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 818 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH8g1520 854 FunFam Auxin response factor 723 817 - -
HCH8g1520 854 ProSiteProfiles B3 DNA-binding domain profile. 153 255 IPR003340 GO:0003677(InterPro)
HCH8g1520 854 MobiDBLite consensus disorder prediction 402 429 - -
HCH8g1520 854 FunFam Auxin response factor 316 388 - -
HCH8g1520 854 Gene3D - 724 817 - -
HCH8g1520 854 ProSiteProfiles PB1 domain profile. 728 812 IPR053793 -
HCH8g1520 854 FunFam Auxin response factor 151 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1100 HCH-Chr14:37927991 HCH8g1520 HCH-Chr8:49320730 1.60E-106 dispersed
HCH1g0159 HCH-Chr1:12427444 HCH8g1520 HCH-Chr8:49320730 1.50E-175 dispersed
HCH2g1164 HCH-Chr2:54214162 HCH8g1520 HCH-Chr8:49320730 6.90E-135 dispersed
HCH6g1284 HCH-Chr6:47092980 HCH8g1520 HCH-Chr8:49320730 2.10E-156 dispersed
HCH8g1520 HCH-Chr8:49320730 HCH9g0585 HCH-Chr9:3937229 7.20E-66 dispersed
HCH8g1520 HCH-Chr8:49320730 HCH3g0834 HCH-Chr3:6324251 1.60E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34099 PF02362 B3 6.80E-21 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1520 K14486 - csv:101206845 1421.76