Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g1526 | ATGGCACAGCTACCCTGCGACGGAGACGGCATTTGCATGCTCTGCAAGGTGAAGAGTGTGGAGTTGGATACAATCACTTGTAAAACATGTGTAACCCCTTGGCATGTTCCATGTCTTTCAAATCCATTGCCTGAAACCCTTGCTTCTACCCTTCAATGGGAATGTCCCGACTGTGATTCTTCTCTCCCTCTTCCTCTCCCTCTCCCTCTTCCTTCTTCCAATGTGTTGATCTCTGCGATCCGAGCCATTGAGTCCGATTCTTCTCTCTCTGATCTTGATAAGGCTAAGAAACGCCAACACCTCTTGAGTGGAAACTCTCACTCCGAATGTGACTCTTCTGACAATAAAACATCAAGAGGAGGCGATGACGATGTTTTAAATTTGTTCGATGAGAGATTGAACTGCTCCTTTTGCATGCAGTTACCAGATAGGCCTGTCACGACACCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAAAAGTGGATTGGGCAAGGAAAAAACACTTGTGCAAAGTGTCGCTGTGTAATTCCCTCCAAAATGGCTTGTCAGCCACGCATTAATTCCACACTTGTAGTGGCCATTCGTATGGCTAAGTTGTCGAATTCAATTGTCTCTGGAGGGCCTCAGAAGGTTTATCATTTTGTTCACAACCAGAACAGACCAGATAAAGCCTATACCACAGACCGAGCACAAAAAAAGGGAAAGGCCAATGCTGCAAGTGGGAAGATTTTTGTTACAATTCCATCTGATCATTTTGGTCCCATCACTGCTGAAAATGATCCTGAGAGGAACCAGGGTGTGCTGGTTGGTGAATGCTGGGAGGATAGATTAGAATGCCGTCAATGGGGTGCTCACTTTCCACATGTTGCAGGTATAGCTGGGCAGTCAAACATTGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAATGGTTCCTTTACACTGGAAGTGGTGGTCGGGACCTTAGTGGGAACAAGCGGACAAGCAAGGATCAGTCCTTTGACCAGAAATTTGAGAAATTTAACAGAGCACTTCAAGTTAGTTGCTTGAAAGGTTATCCTGTTAGGGTAGTTAGATCTCACAAAGAAAAGCGTTCTTCATATGCTCCAGAGAAGGGTTTGCGGTATGATGGAATTTACAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAGGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGTGATGAACATGGAGATCGACCTAGATCGTTACCCGCAATCCCCGAGTTGAAGAAGGCGTCAGAAATTACTGAGAGGAAGGAAGGTCCATCATGGGATTTTGAGGAGAAAGATAGCAAGTGGAAGTGGAGCAAACCTCCACCAACTAGCAGGAAACCTGTTGAAACTGCGGATGCTGCTTCTAGGAAGAGGTCTAGGAGAATAATTAGGCAGTCGCAGAGTATGAATGTCAGAGAAAAGTTACTGAAAGAATTTAGCTGCCTTATTTGCCGGGAGGTGATGACTCTGCCTATTACAACACCTTGTGCCCATAACTTTTGTAAGCCATGCTTGGAAGGTGCTTTTGTGGGCAAGACATTCTTGAGAGAGAGAAGTAGAGGTGGACGGTCTCTTCGATCCCAAAAGAATATCATGAATTGTCCTTCTTGCCCAACAGATATATCTGATTTTTTACAGAATCTTCAGGTAAATAGAGAGTTGCTGGATGTGATCGAGTCACTGAAAAGTAAGATTGAGGCAGAAGAGGATACAGCTGAGAAGCCAAATGAAGAAGACATGGATGATGATGAGAATGAGGATCCAGGTATTAAAAATGAAGGAAATAACAATGAGTGTAATAGTCCAGTGAAAACAAAAAAGCGAGCAAAAGTTAATGGTGAGGATGATTCGCCTTCAAGCCCCCTTCACGTGCGAGCTCAGTAA | 1962 | 44.39 | MAQLPCDGDGICMLCKVKSVELDTITCKTCVTPWHVPCLSNPLPETLASTLQWECPDCDSSLPLPLPLPLPSSNVLISAIRAIESDSSLSDLDKAKKRQHLLSGNSHSECDSSDNKTSRGGDDDVLNLFDERLNCSFCMQLPDRPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMACQPRINSTLVVAIRMAKLSNSIVSGGPQKVYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPITAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNIGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKFNRALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRSLPAIPELKKASEITERKEGPSWDFEEKDSKWKWSKPPPTSRKPVETADAASRKRSRRIIRQSQSMNVREKLLKEFSCLICREVMTLPITTPCAHNFCKPCLEGAFVGKTFLRERSRGGRSLRSQKNIMNCPSCPTDISDFLQNLQVNRELLDVIESLKSKIEAEEDTAEKPNEEDMDDDENEDPGIKNEGNNNECNSPVKTKKRAKVNGEDDSPSSPLHVRAQ | 653 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 49349138 | 49354129 | - | evm.model.ptg000008l.9 | HCH8g1526 | 550624 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g1526 | 653 | MobiDBLite | consensus disorder prediction | 598 | 614 | - | - | |
| HCH8g1526 | 653 | Coils | Coil | 577 | 604 | - | - | |
| HCH8g1526 | 653 | ProSitePatterns | Zinc finger RING-type signature. | 522 | 531 | IPR017907 | - | |
| HCH8g1526 | 653 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 60 | IPR013083 | - | |
| HCH8g1526 | 653 | MobiDBLite | consensus disorder prediction | 100 | 121 | - | - | |
| HCH8g1526 | 653 | MobiDBLite | consensus disorder prediction | 419 | 465 | - | - | |
| HCH8g1526 | 653 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 234 | 429 | - | - | |
| HCH8g1526 | 653 | Pfam | Zinc finger, C3HC4 type (RING finger) | 135 | 173 | IPR018957 | GO:0046872(InterPro) | |
| HCH8g1526 | 653 | SUPERFAMILY | RING/U-box | 127 | 181 | - | - | |
| HCH8g1526 | 653 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 201 | IPR013083 | - | |
| HCH8g1526 | 653 | ProSiteProfiles | Zinc finger PHD-type profile. | 9 | 61 | IPR019787 | - | |
| HCH8g1526 | 653 | ProSiteProfiles | Zinc finger RING-type profile. | 135 | 174 | IPR001841 | - | |
| HCH8g1526 | 653 | ProSitePatterns | Zinc finger PHD-type signature. | 12 | 58 | IPR019786 | - | |
| HCH8g1526 | 653 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 483 | 612 | IPR013083 | - | |
| HCH8g1526 | 653 | MobiDBLite | consensus disorder prediction | 419 | 486 | - | - | |
| HCH8g1526 | 653 | ProSiteProfiles | YDG domain profile. | 263 | 411 | IPR003105 | - | |
| HCH8g1526 | 653 | ProSiteProfiles | Zinc finger RING-type profile. | 507 | 563 | IPR001841 | - | |
| HCH8g1526 | 653 | FunFam | Predicted protein | 92 | 200 | - | - | |
| HCH8g1526 | 653 | SUPERFAMILY | FYVE/PHD zinc finger | 4 | 67 | IPR011011 | - | |
| HCH8g1526 | 653 | CDD | RING-HC_ORTHRUS_rpt1 | 131 | 178 | IPR047498 | - | |
| HCH8g1526 | 653 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 3 | 612 | IPR045134 | GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
| HCH8g1526 | 653 | Pfam | RING-type zinc-finger | 507 | 538 | IPR027370 | - | |
| HCH8g1526 | 653 | Gene3D | - | 234 | 432 | IPR036987 | - | |
| HCH8g1526 | 653 | Pfam | SAD/SRA domain | 265 | 414 | IPR003105 | - | |
| HCH8g1526 | 653 | SUPERFAMILY | RING/U-box | 500 | 588 | - | - | |
| HCH8g1526 | 653 | SMART | G9a_1 | 258 | 415 | IPR003105 | - | |
| HCH8g1526 | 653 | SMART | ring_2 | 135 | 173 | IPR001841 | - | |
| HCH8g1526 | 653 | SMART | ring_2 | 507 | 563 | IPR001841 | - | |
| HCH8g1526 | 653 | SMART | PHD_3 | 11 | 59 | IPR001965 | - | |
| HCH8g1526 | 653 | MobiDBLite | consensus disorder prediction | 592 | 653 | - | - | |
| HCH8g1526 | 653 | SUPERFAMILY | PUA domain-like | 237 | 431 | IPR015947 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH8g1526 | K10638 | - | csv:101220457 | 1026.93 |