Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1527 ATGGATCCACATCCGGAACCCTTCTCCACCAGTTTGTTCAAATGGGATCCTAGAGGAATAGTTGGTAACAGGTTGCATCTGGAAACCATGGCACCACCACTACATGTACAACCTCCGAGAGAGAGGGAGAGGGAGAGGGAGTTAGGAGGCCTAGAGGAGTTATTCCAGGCTTATGGTATCAGGTATTTCACAGCCGCTAAAATAGCTGAACTTGGATTCACTGTAAGTACTCTTCTCGACATGAAAGATGAAGAGTTGGAGGAGATGATGAATAGCCTCTCTCAAATATTTCGATGGGAACTTCTCGTGGGAGAAAGGTATGGAATTAAAGCAGCTGTTAGAGCTGAGAGGAGGCGTCTAGATGACGACATTGACTCAAGGAGGCGTCATGCTCATCTTCTGTCCAATGATACAACAACTACTACAAACGCCTTGGACGCTCTTTCTCAGGAAGGGCTTTCTGAAGAGCCGGTGCAACAAGGTGAGAAAGAGATGGTGGGGAGCGGAGGAGGAGTTACATGGGAGGTTGTTGCAGCAGCGGAAGCGGAGAGGAAGAAGCAACGGAAGAGAAATATTGGAAAAAAGAAACAGTTGTTGTTGGAGGATGAAGATCACGATGAAAACTACGATCAGTTGGAGGATAATAATAATAAAAGTGAACTAGTAATAAGTGAAAGACAAAGGGAACATCCATTTATCGTAACTGAACCAGGGGAGGTTGCAAGAGGAAAGAAGAACGGCCTTGACTATCTCTTCCATCTCTACGAGCAGTGTCGTGATTTTTTAATCCAAGTTCAGAACATTGCAAAGGAACGAGGTGAAAAATGCCCCACCAAGGTGACTAACCAGGTGTTTAGGTATGCGAAGAAGGCGGGAGCAAGTTATATAAACAAGCCAAAGATGAGACACTACGTCCACTGCTATGCCCTTCATTGTCTAGATGAAGAGGCTTCGAATGCATTGAGAAGGGTTTTCAAAGAAAGGGGTGAAAATGTAGGAGCTTGGAGACAATCATGCTATAAACCTCTTGTTGCTATTGCTGCTGCTCAAGGTTGGGATATCGATGCCATTTTCAACGCACATCCACGCCTTTCCATTTGGTATGTCCCTACCAAACTTCGTCAACTTTGCCATGCTGAGCGCAACACTGCCACTGCTTCAACCTCTTCCTCCGTCTCACTCTCAGGCCCCGCTCGTCATCATCACTTGCCTTTTTAA 1218 45.81 MDPHPEPFSTSLFKWDPRGIVGNRLHLETMAPPLHVQPPRERERERELGGLEELFQAYGIRYFTAAKIAELGFTVSTLLDMKDEELEEMMNSLSQIFRWELLVGERYGIKAAVRAERRRLDDDIDSRRRHAHLLSNDTTTTTNALDALSQEGLSEEPVQQGEKEMVGSGGGVTWEVVAAAEAERKKQRKRNIGKKKQLLLEDEDHDENYDQLEDNNNKSELVISERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQSCYKPLVAIAAAQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNTATASTSSSVSLSGPARHHHLPF 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49356952 49358728 - evm.model.ptg000008l.8 HCH8g1527 550625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1527 405 Gene3D Protein LEAFY 223 391 IPR038276 -
HCH8g1527 405 Coils Coil 195 229 - -
HCH8g1527 405 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 224 385 IPR035209 GO:0003677(InterPro)
HCH8g1527 405 PANTHER PROTEIN LEAFY 1 393 IPR002910 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH8g1527 405 Pfam Floricaula / Leafy protein SAM domain 46 123 IPR035079 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1527 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g1527 . 5 392 Orphan Transcription Factor Family AT5G61850 66.1 1.4e-123 439.9
HCH10g0050 . 1 167 Orphan Transcription Factor Family AT1G06040 69.0 8.6e-62 233.4
HCH6g0619 . 1 109 Orphan Transcription Factor Family AT1G06040 65.1 5.6e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007487 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34101 PF17538 C_LFY_FLO 1.80E-107 CL0123 HCH TF