Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1527 ATGGATCCACATCCGGAACCCTTCTCCACCAGTTTGTTCAAATGGGATCCTAGAGGAATAGTTGGTAACAGGTTGCATCTGGAAACCATGGCACCACCACTACATGTACAACCTCCGAGAGAGAGGGAGAGGGAGAGGGAGTTAGGAGGCCTAGAGGAGTTATTCCAGGCTTATGGTATCAGGTATTTCACAGCCGCTAAAATAGCTGAACTTGGATTCACTGTAAGTACTCTTCTCGACATGAAAGATGAAGAGTTGGAGGAGATGATGAATAGCCTCTCTCAAATATTTCGATGGGAACTTCTCGTGGGAGAAAGGTATGGAATTAAAGCAGCTGTTAGAGCTGAGAGGAGGCGTCTAGATGACGACATTGACTCAAGGAGGCGTCATGCTCATCTTCTGTCCAATGATACAACAACTACTACAAACGCCTTGGACGCTCTTTCTCAGGAAGGGCTTTCTGAAGAGCCGGTGCAACAAGGTGAGAAAGAGATGGTGGGGAGCGGAGGAGGAGTTACATGGGAGGTTGTTGCAGCAGCGGAAGCGGAGAGGAAGAAGCAACGGAAGAGAAATATTGGAAAAAAGAAACAGTTGTTGTTGGAGGATGAAGATCACGATGAAAACTACGATCAGTTGGAGGATAATAATAATAAAAGTGAACTAGTAATAAGTGAAAGACAAAGGGAACATCCATTTATCGTAACTGAACCAGGGGAGGTTGCAAGAGGAAAGAAGAACGGCCTTGACTATCTCTTCCATCTCTACGAGCAGTGTCGTGATTTTTTAATCCAAGTTCAGAACATTGCAAAGGAACGAGGTGAAAAATGCCCCACCAAGGTGACTAACCAGGTGTTTAGGTATGCGAAGAAGGCGGGAGCAAGTTATATAAACAAGCCAAAGATGAGACACTACGTCCACTGCTATGCCCTTCATTGTCTAGATGAAGAGGCTTCGAATGCATTGAGAAGGGTTTTCAAAGAAAGGGGTGAAAATGTAGGAGCTTGGAGACAATCATGCTATAAACCTCTTGTTGCTATTGCTGCTGCTCAAGGTTGGGATATCGATGCCATTTTCAACGCACATCCACGCCTTTCCATTTGGTATGTCCCTACCAAACTTCGTCAACTTTGCCATGCTGAGCGCAACACTGCCACTGCTTCAACCTCTTCCTCCGTCTCACTCTCAGGCCCCGCTCGTCATCATCACTTGCCTTTTTAA 1218 45.81 MDPHPEPFSTSLFKWDPRGIVGNRLHLETMAPPLHVQPPRERERERELGGLEELFQAYGIRYFTAAKIAELGFTVSTLLDMKDEELEEMMNSLSQIFRWELLVGERYGIKAAVRAERRRLDDDIDSRRRHAHLLSNDTTTTTNALDALSQEGLSEEPVQQGEKEMVGSGGGVTWEVVAAAEAERKKQRKRNIGKKKQLLLEDEDHDENYDQLEDNNNKSELVISERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQSCYKPLVAIAAAQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNTATASTSSSVSLSGPARHHHLPF 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49356952 49358728 - evm.model.ptg000008l.8 HCH8g1527 550625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1527 405 Gene3D Protein LEAFY 223 391 IPR038276 -
HCH8g1527 405 Coils Coil 195 229 - -
HCH8g1527 405 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 224 385 IPR035209 GO:0003677(InterPro)
HCH8g1527 405 PANTHER PROTEIN LEAFY 1 393 IPR002910 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH8g1527 405 Pfam Floricaula / Leafy protein SAM domain 46 123 IPR035079 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34101 PF17538 C_LFY_FLO 1.80E-107 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1527 - - - 0.0