Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0012 ATGGAACAAGGAGGATCTCCCTTTTCTTCTACTCCTTCCCAGTTTTCAGGGGCTTATCTAAGTAGGAATCTTATTTTAGCATACCAAAGTTTTGGGGTCGTGTATGGAGATTTGAGCACTTCACCACTTTATGTCTACTCAAGCACATTTGCAGGCAAGTTGCAGAAACATCGAACTGAGGAAGCGATATTTGGTGCATTCTCCTTGATTTTCTGGACTTTTACACTTATACCCTTGCTCAAATATGTCTTCATTGTATTGAGTGCAGATGATAATGGTGAAGGAGGAACCTTTGCTCTTTACTCATTGCTATGTCGACATGCCAAGTTTAGTCTACTCCCTAACCAACAAGCAGCGGATGAGGAGCTCTCTTCTTACAAGTATGGCCCATCTTCTCATGCTGTAGCCTCTTCTCAACTTAAAAGGTTTTTGGAAAGGCATAAAAGACTGAGGACGGCCTTACTTCTTGTCGTATTATTTGGTGCTTGCATGGTCATTGGTGATGGTGTGCTAACTCCTGCAATTTCAGTTCTCTCATCAGTTTCAGGGTTACAAGTCACTGAAGCTAAATTGGCCCATGGGGCACTCCTTTTGATTGCTTGTGTCATTTTGGTTGGCCTGTTTGCCCTTCAGCATTGTGGGACCCACAAGGTTGCGTTTATATTTGCTCCAATAGTTATCATCTGGTTGTTGTCAATCTTCTCCATTGGGCTGTACAACATTATACATTGGAACCCAAGTATTATCCGTGCGATTTCCCCTCATTATGTTGTTAAGTTCTTTAGAAACACCGGTAAAGATGGTTGGGTTTCTCTTGGAGGCATTCTTCTGTCCATAACTGGTACTGAAGCAATGTATGCAGATCTCGGTCATTTTACTGCTTTGTCAATAAGGCTTGCATTTGCATTTGTTATCTACCCTTGTTTGGTAGTACAATACATGGGTCAGGCTGCTTTCCTGTCTAAAAACCTCGATTTGTTTCCTAATAGTTTTTATGACTCGATACCCGAACCTGTATTTTGGCCAGTTTTTATCATTGCCACCCTTGCAGCTATTGTGGGGAGCCAGGCTGTCATTACTGCTACTTTCTCTATTGTCAAACAATGTCATGCCCTCGGTTGCTTTCCAAGAGTGAAAGTTGTCCACACCTCTAAACACATGTATGGGCAGATCTACATCCCAGAAATCAACTGGATACTTATGATCCTTACTCTTTCCATTACGATTGGGTTCCAAGATACAACATTAATTGGAAATGCTTATGGACTTGCCTGCATGACAGTTATGTTTATTACAACATTTCTTATGGCGCTTGTCATAGTGTTCGTTTGGCAGAAAAGCATCCTGTTGGCTGCACCTTTCTTCATCTTCTTCTGGTTTGTTGAGGGTGTCTACTTATCAGCAGCATTCATAAAAGTGCCTCAAGGAGGGTGGGTACCTCTTGTGCTGTCAGTCATCTTTATGATTATTATGTTTGTTTGGCATTATGGCACTCGCAAGAAGTACAACTTTGACCTACATAATAAAGTTTCACTAAAGTGGTTACTTGGCCTGGGTCCAAGCCTCGGTATAGTTCGTGTGCCAGGGATAGGTCTCATATACTCAGAATTGGCAACAGGAGTTCCAGCAATATTTTCACACTTTGTGACAAACCTCCCTGCATTCCACAAGGTTTTAGTCTTTGTTTGTGTAAAATCTGTTCCTGTTCCATACGTCTCACCTGAAGAACGTTTCCTCATTGGGCGAATTTGTCCCAGACCATATCGTATGTATCGGTGCATTGTGAGGTATGGGTACAAGGACATTCAGAAGGATGATGGAGACTTTGAGAACCAGCTTATACTAAACATAGCACAGTTTATTCAAATGGAGGCAGTGGAACCACAATTATCAAGCTCTGAAAGTTCTTCATTTGATGGGAGGATGGCTGTCATAAGCACTCGAAGTATACAGTCGAGTTTGAGCTTAATAGTGTCGGGGAATGAAGAAGTTGGTACGAGCAATGCCATCCATAGCAGCAAATCTTCCACACTACACAGTTTACGATCAGTTTATGAGGATGAGAATCCACAACTCAGAAGGCGCCAAGTGAGGTTTCAGTTGTCTCCAAGCCCTTCTATAGATCTTGGAGTTAGGGAAGAATTGATGGACTTGATCCAAGCAAAAGAGGCAGGTACTGCTTACATAATGGGGCATTCATATGTGAAGGCAAGAAGATCATCTTCATATTTGAAGAAGCTTGTAATAGATATTGGGTACTCATTCCTGCGAAAGAACTGCAGGGGCCCGTCTGTAGCACTCAATATCCCTCACATCAGTTTAATTGAAGTGGGCATGATATATTATGTTTAG 2352 42.01 MEQGGSPFSSTPSQFSGAYLSRNLILAYQSFGVVYGDLSTSPLYVYSSTFAGKLQKHRTEEAIFGAFSLIFWTFTLIPLLKYVFIVLSADDNGEGGTFALYSLLCRHAKFSLLPNQQAADEELSSYKYGPSSHAVASSQLKRFLERHKRLRTALLLVVLFGACMVIGDGVLTPAISVLSSVSGLQVTEAKLAHGALLLIACVILVGLFALQHCGTHKVAFIFAPIVIIWLLSIFSIGLYNIIHWNPSIIRAISPHYVVKFFRNTGKDGWVSLGGILLSITGTEAMYADLGHFTALSIRLAFAFVIYPCLVVQYMGQAAFLSKNLDLFPNSFYDSIPEPVFWPVFIIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHMYGQIYIPEINWILMILTLSITIGFQDTTLIGNAYGLACMTVMFITTFLMALVIVFVWQKSILLAAPFFIFFWFVEGVYLSAAFIKVPQGGWVPLVLSVIFMIIMFVWHYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRICPRPYRMYRCIVRYGYKDIQKDDGDFENQLILNIAQFIQMEAVEPQLSSSESSSFDGRMAVISTRSIQSSLSLIVSGNEEVGTSNAIHSSKSSTLHSLRSVYEDENPQLRRRQVRFQLSPSPSIDLGVREELMDLIQAKEAGTAYIMGHSYVKARRSSSYLKKLVIDIGYSFLRKNCRGPSVALNIPHISLIEVGMIYYV 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 101601 106976 - evm.model.ptg000007l.12 HCH9g0012 550644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0012 783 NCBIfam potassium uptake protein 26 783 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
HCH9g0012 783 Pfam K+ potassium transporter C-terminal domain 528 781 IPR053952 -
HCH9g0012 783 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 21 783 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
HCH9g0012 783 Pfam K+ potassium transporter integral membrane domain 26 515 IPR053951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1017 HCH-Chr1:58176627 HCH9g0012 HCH-Chr9:101601 1.50E-246 dispersed
HCH3g0502 HCH-Chr3:3250351 HCH9g0012 HCH-Chr9:101601 7.60E-211 dispersed
HCH4g0006 HCH-Chr4:63819 HCH9g0012 HCH-Chr9:101601 2.10E-245 dispersed
HCH9g0012 HCH-Chr9:101601 HCH9g0158 HCH-Chr9:943132 1.30E-258 dispersed
HCH3g1457 HCH-Chr3:52556885 HCH9g0012 HCH-Chr9:101601 2.70E-237 transposed
HCH3g0501 HCH-Chr3:3243838 HCH9g0012 HCH-Chr9:101601 1.50E-201 wgd
HCH5g1145 HCH-Chr5:38196589 HCH9g0012 HCH-Chr9:101601 1.10E-185 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0012 K03549 - csv:101208973 1420.22