Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0020 ATGTCCATCCTCCCTTCACATATCCACGGTTCCAATTCAACATCTTCTTCTTCTTCTTCACTATCCTCCCTTAACCCTAATTCCCTCCATGGAACTCCATTCCTCCACCCTCAATCTCCCCATACCCATTCTTCCCCTTCCCTTCCCATCTCCCTTCCTCACTCTTCTCTCTCCGACTCCTCTAACGCTTCAGCCTCATCGGCTCAACCTGCAAAGGATGTTGCTCAATCTTCCAAGAAGGTAACTGAATTGGAGAGGGCCCCGAATGATTTGAAGATGTCAACTTGTCAAAACACCGACACTAACTTTCAGTGTCACTCTGGTGGACAAGAGGGTGGATCCATCCTTCCTGGGGATAAATTGTCACCAACTCTCATTTCGCCTCATGGCAACAATAAACGTGGGGCAGGAAGAAGAGCCCAGGTCTCAAATGGCAACCATTTGCTTAATTTTCAATATGACCCCATTTCTCGTCCTCGTCCCAGAGCTCCTCCTCCAAGAAGGCAGCATAAGATAAAACCATATAATAAGGATCTCTTTCTTCAGGCTAATTACAAATTTGTAATGTTAGATTCAGGGTATCATACAGATGAATATCTAGATCCGGATAAAATGCTGCATTGGGAGGATGTCATATGTGTAAGGTATTCAACTCCATCATTGATCCAGTGTCCTATTTGCTTGGAACATCCACTCTGTCCTCAAATTACTTCGTGTGGACATATTTTTTGTTTCCCGTGTATTTTGAGGTACCTATTAATGGGCAAGGAAGATCATAAAGGTGACTGCTGGAAAAAATGCCCTTTGTGTTTTGTGATGGTATCTCTAAAGGATCTGTATACTGTCCACATTGATAGTTTGAAGCAATATTCTGTTGGAGATGCTATAGATTTTATGCTTTTAACTCGACAAAAAAATTCATTTACCATATCGTGCAAGGATAAACAAGACAGTGATGCCAGGTCAATTGACAATGGTGAAATCTATGATAATTTTTCAAAGTTTATATTTACCTCAGACGTGGAGCTCTCTGTGCGAAAAGCAATATCTGATCTAGATGGCTGGTTAGCAAAAGCAGATGCAGGGCTAGTTGATGACCTGGAACAGCTTCCATATGTTAGTGCTGCATTGGAACAATTGGAGCAGCGGAAGAGGTATTGGAATGGTCATCAGGTTCGTTCTAAGCATAGTGATTATCAGATAGGATCTCACGTGGCCCTGTCAACTGCTAATGTTAGCAAAGCTGGTCTAGGAGCAGGCAGTTCTAGACATGAAACTTCTTCCACTGATGTTAATGATGGAAGCAAGTATCTGAAAAGTATAGTGGTAGATAAGTTGGATTATTCTACTCCTTTGTTGGACCAGGCTTTGACTATGGGTGATTCTCAAGGATTCCAACAAAACTCAACTGAATGTAGAGATGCAAAAGACAGTGATTTCTATAATTTCTACCAGGCTACTGATGGTCAGCACCTCATTCTCCATCCATTAAACATGAAGTGTCTTCTACAACATTATGGGAGTTATGATATGCTTCCTCACAGAATAAGTGGAAAGATTTTACAATTGGAAACAATGACCCAGACCGAGGCCACAAGGAGACGGTATCGTTACCTGAGTCATTTTTCTTTAACAACAACATTTCAGCTCTGTGAAATTAATCTGGCTGACCTATTGCCCTTGTCATCCATGATCCCTTTCATGGATGAGATAAAGAAGCGTGAAAAACTGAGGAAACAACTTGCGAAAAGGATGCAAAAGGAGAAGATCAAAGAAGAAGCTGCTTCAACATGTTCTCTGCCAATGATGGCCAATTCGAGACATTCTTATTCTGATGATACTCCAAACCTTTCCATGGATGACTTCGAGGCTTTAGGAAGTTCTACTGGGACATCGTCCAGCCCCCCTGTTGGGGAGAGGCAACTGTTTTCAAGTGTTACAAGGCTTGGTTTCGCTGCTGGGCATGATTCCCCGTCCTTGAAAATTGAGGAAACTGATTCTCTGCACGTTCATGAAGTGAAAAGTGATTTGTCTGGTGTAACTGACGTACGGAATGCAACGCCATCATTTGCAAACATAATATCGAGAGCAAAGTCTGGAGGAAACATGGATGCACAAGCACCAAAGATGAACGAGGCGGGAAAGAAGGGGAAGAAACCAAGTCGAGTACTATTATCCACGGCGGGTGGTCGGCGCTATTGA 2202 42.64 MSILPSHIHGSNSTSSSSSSLSSLNPNSLHGTPFLHPQSPHTHSSPSLPISLPHSSLSDSSNASASSAQPAKDVAQSSKKVTELERAPNDLKMSTCQNTDTNFQCHSGGQEGGSILPGDKLSPTLISPHGNNKRGAGRRAQVSNGNHLLNFQYDPISRPRPRAPPPRRQHKIKPYNKDLFLQANYKFVMLDSGYHTDEYLDPDKMLHWEDVICVRYSTPSLIQCPICLEHPLCPQITSCGHIFCFPCILRYLLMGKEDHKGDCWKKCPLCFVMVSLKDLYTVHIDSLKQYSVGDAIDFMLLTRQKNSFTISCKDKQDSDARSIDNGEIYDNFSKFIFTSDVELSVRKAISDLDGWLAKADAGLVDDLEQLPYVSAALEQLEQRKRYWNGHQVRSKHSDYQIGSHVALSTANVSKAGLGAGSSRHETSSTDVNDGSKYLKSIVVDKLDYSTPLLDQALTMGDSQGFQQNSTECRDAKDSDFYNFYQATDGQHLILHPLNMKCLLQHYGSYDMLPHRISGKILQLETMTQTEATRRRYRYLSHFSLTTTFQLCEINLADLLPLSSMIPFMDEIKKREKLRKQLAKRMQKEKIKEEAASTCSLPMMANSRHSYSDDTPNLSMDDFEALGSSTGTSSSPPVGERQLFSSVTRLGFAAGHDSPSLKIEETDSLHVHEVKSDLSGVTDVRNATPSFANIISRAKSGGNMDAQAPKMNEAGKKGKKPSRVLLSTAGGRRY 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 144406 148568 + evm.model.ptg000007l.20 HCH9g0020 550652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0020 733 CDD RING-HC_RNF10 222 279 - -
HCH9g0020 733 MobiDBLite consensus disorder prediction 1 76 - -
HCH9g0020 733 MobiDBLite consensus disorder prediction 150 171 - -
HCH9g0020 733 MobiDBLite consensus disorder prediction 698 733 - -
HCH9g0020 733 SUPERFAMILY RING/U-box 223 277 - -
HCH9g0020 733 ProSiteProfiles Zinc finger RING-type profile. 224 270 IPR001841 -
HCH9g0020 733 PANTHER RING FINGER 10 FAMILY MEMBER 67 733 IPR039739 GO:0000976(PANTHER)|GO:0045944(PANTHER)
HCH9g0020 733 SMART ring_2 224 270 IPR001841 -
HCH9g0020 733 ProSitePatterns Zinc finger RING-type signature. 239 248 IPR017907 -
HCH9g0020 733 MobiDBLite consensus disorder prediction 1 95 - -
HCH9g0020 733 Pfam Zinc finger, C3HC4 type (RING finger) 224 270 IPR018957 GO:0046872(InterPro)
HCH9g0020 733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 330 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0154 HCH-Chr7:1042413 HCH9g0020 HCH-Chr9:144406 9.50E-06 dispersed
HCH9g0020 HCH-Chr9:144406 HCH2g0823 HCH-Chr2:51774507 1.30E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0020 K26979 - csv:101203987 1006.9