Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0022 ATGCTTCCAAAGTGTAAGGGGATGGTTTGGATGGAGGGAGAGCATTACCAAGAAGAAGAAGAAGAAGAAGTTGAGATGCCCATTTCTGGTTCTATTTCTTCCTTCAAATCAATGCTTGAAGGTGACTGGTTCATCAACAACAATCCCACTTGTACCCAAGATTTCAGTTCCCATCATCCTATTTCTTTCACTTCAGACCCAAATCCAAATCCAAATCCAAATGATAACTTACTCTTACACCCAATAGACTCTTCCTCTTCATGCTCTCCATCCCAAGCTTTTGCTCCTTCACATTCTCACAAATCATGTTTCTCTTCTCTCTTAAATGTAGTTTGTGGTACCAATTTTGATAATTCCTTTGATTTGGGATCCCACAATGGACTCCTTGCTACCTCCTATCATCAACCTTGTAATTCCATGCCATTCACTTCACTTCCTCAACCTCAGATGGGTATTCCTAATCAGGAACTCACCTTAAACAACTCAACCCCTTTCGGAACTTTGGATGGGAATGCTAAAGTTTTGGGACCTCTTCAAGTGTTTCCGCAGCTGGGTGCACCCCCGACTCTATTTCAGAAGAGAGCTTTGCATAGAGCTGATAAATTTGGAGAAGTCTCCATTTGGAACAATAACCATCTCCACGATGCACTTGATCTTCATGATCCCACTTTGGATGTTTCTCGTTTCAATTACGATTCTGATGAGCTTAATGAGTATACTAACTTTGAAGACAATGTCGATGATGCTAATCATTCTAATGCTAACTCTACTTTTACTGCTTCTGCTGCTGCTGGAGACCTCAAGGGAAAGAAGAAAGGGATGCCCGCTAAAAATCTTATGGCCGAGAGGCGCCGGAGAAAGAAGCTCAATGATAGGCTTTACATGCTTAGGTCTGTCGTTCCCAAAATAAGCAAGATGGATAGAGCTTCAATACTTGGAGATGCCATTGACTACTTGAAGGAGCTTCTTCAAAGGATTAATGAACTCCACAATGAACTTGAGTCTACTCCTCCTGGTTCTTTGTTGCAGCCTTCTGCAAGCTTTCATCCTTTGACGCCAACGCCACCTACCCTTCCCTGTCGTGTCAAAGAAGAGCTGTGTCCGAGTTCTTTGTCGAGTCCTAAAAGCCAGCCTGCCAGGGTGGAAGTCAGGACCAGGGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCCCGCAAACCGGGTCTCTTGCTATCCACCATGAGGGCTTTGGATAACCTTGGATTGGACATCCAACAAGCGGTGATCAGTTGTTTCAATGGATTTGCTTTAGATGTGTTTCGAGCTGAGCAATCCAAGGAAGGTCAAGAAATCTTGCCGGAGCAAATTAAAGCAGTACTGTTGGATTCAGCTGGTTTGCATGGCGTGTTATAG 1395 43.58 MLPKCKGMVWMEGEHYQEEEEEEVEMPISGSISSFKSMLEGDWFINNNPTCTQDFSSHHPISFTSDPNPNPNPNDNLLLHPIDSSSSCSPSQAFAPSHSHKSCFSSLLNVVCGTNFDNSFDLGSHNGLLATSYHQPCNSMPFTSLPQPQMGIPNQELTLNNSTPFGTLDGNAKVLGPLQVFPQLGAPPTLFQKRALHRADKFGEVSIWNNNHLHDALDLHDPTLDVSRFNYDSDELNEYTNFEDNVDDANHSNANSTFTASAAAGDLKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINELHNELESTPPGSLLQPSASFHPLTPTPPTLPCRVKEELCPSSLSSPKSQPARVEVRTREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGQEILPEQIKAVLLDSAGLHGVL 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 154219 157080 - evm.model.ptg000007l.22 HCH9g0022 550654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0022 464 Gene3D - 269 336 IPR036638 GO:0046983(InterPro)
HCH9g0022 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 276 341 IPR036638 GO:0046983(InterPro)
HCH9g0022 464 Coils Coil 312 336 - -
HCH9g0022 464 FunFam BHLH transcription factor 269 337 - -
HCH9g0022 464 SMART finulus 279 328 IPR011598 GO:0046983(InterPro)
HCH9g0022 464 Pfam Helix-loop-helix DNA-binding domain 280 322 IPR011598 GO:0046983(InterPro)
HCH9g0022 464 MobiDBLite consensus disorder prediction 57 76 - -
HCH9g0022 464 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 237 459 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH9g0022 464 Pfam Plant bHLH transcription factor, ACT-like domain 381 454 IPR054502 -
HCH9g0022 464 CDD bHLH_AtAMS_like 276 340 - -
HCH9g0022 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 322 IPR011598 GO:0046983(InterPro)
HCH9g0022 464 CDD ACT_UUR-ACR-like 393 453 - -
HCH9g0022 464 ProSiteProfiles ACT domain profile. 392 464 IPR002912 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0718 HCH-Chr12:4507731 HCH9g0022 HCH-Chr9:154219 3.00E-34 dispersed
HCH4g0295 HCH-Chr4:1901838 HCH9g0022 HCH-Chr9:154219 1.10E-32 dispersed
HCH8g0365 HCH-Chr8:32998465 HCH9g0022 HCH-Chr9:154219 3.50E-13 dispersed
HCH8g1061 HCH-Chr8:46542047 HCH9g0022 HCH-Chr9:154219 1.10E-12 dispersed
HCH9g0022 HCH-Chr9:154219 HCH13g1064 HCH-Chr13:33626299 6.00E-06 dispersed
HCH6g1384 HCH-Chr6:47743178 HCH9g0022 HCH-Chr9:154219 2.50E-10 transposed
HCH7g0460 HCH-Chr7:3401919 HCH9g0022 HCH-Chr9:154219 7.30E-20 transposed
HCH3g0476 HCH-Chr3:3076916 HCH9g0022 HCH-Chr9:154219 2.00E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34103 PF00010 HLH 1.80E-09 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0022 - - - 0.0