Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0028 ATGGGAGTTGAAAATACTTCCTATTTCGTTTCATACGTGGCAGCGAGATTGAAACACCGGGAAACAGAGAGAAAATCATTTCGCGCCATCGGACCCTTTTTACCTTCCAATTCAATTTTTCATCTTTCATCTCTTTCAGAAACTCCAGAAATGGCGATCGCAGAAAATCCGTCTCCTCAATCTCTAATCCCAAGCTTCCTCTACTCATCTTCTCCGTCTCGTAATCGGAAGAAGAATATGTTTGAAATTCAATCACCGAGTGAGCCAAGGAAGACGATAGAGATGTATTCACCCTCTTTCTATGCCGCATGTACCTTTGGCGGCATGCTATGCTGTGGTCTCACTCATATGGCTGCCACTCCTCTTGATCTCGTCAAATGCAACATTCAGATTGACCCCGTGAAATACAAAGGCATTCAATCTGGTTTCGGAGTTCTGCTGCGGGAGCAGGGAATCAGAGGCTTCTTTAGGGGTTGGGTGCCAACTCTGTTGGGTTACAGTGCTCAGGGTGCCTGCAAGTATGGATTCTATGAATTTTTTAAGAAATATTATTCTGATATTGCCGGACCAGAGTATGCAGCCAAGTATAAGACTCTTATCTATCTTGCTGGCTCTGCATCTGCTGAGGTGATTGCAGATGTTGCACTTTGCCCCTTTGAAGCTGTTAAAGTTAGAGTTCAAACTCAGCCAGGTTTTGCTAGAGGTTTATCCGATGGTCTTCCTAAATATGTTAGATCTGAAGGTGCCCTAGGGTTGTATAAGGGTATTGTTCCTCTGTGGGGACGTCAGATTCCATACACAATGATGAAGTTTGCAACATTTGAGAACATTGTTGAGCTCATCTACAAGCATGCCATTCCCACTCCAAAGAACGAATGCAGCAGTCGTTTACAGCTCGGTGTCAGCTTCACTGGTGGATATATCGCCGGTGTTTTTTGTGCTGTTATATCTCATCCCGCTGATAATCTGGTCTCTTTTCTCAATAATTCTAAAGGGGCAAGCGTTGGTGATGCGGTGAAGAAGCTTGGATTGTGGGGTCTCTTCACACGAGGGTTGCCTCTCCGTATATTCATGATTGGAACTCTCACCGGAGTACAGTGGGTTATCTACGATGCATTCAAAGTTGCTGTTGGACTGCCAACTACTGGTGGGGTTGCCCCTGCCGCAGCCAATGTCGTTGCATCTTCAGAGCTGGCGAAGGCGTAG 1206 45.61 MGVENTSYFVSYVAARLKHRETERKSFRAIGPFLPSNSIFHLSSLSETPEMAIAENPSPQSLIPSFLYSSSPSRNRKKNMFEIQSPSEPRKTIEMYSPSFYAACTFGGMLCCGLTHMAATPLDLVKCNIQIDPVKYKGIQSGFGVLLREQGIRGFFRGWVPTLLGYSAQGACKYGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKYVRSEGALGLYKGIVPLWGRQIPYTMMKFATFENIVELIYKHAIPTPKNECSSRLQLGVSFTGGYIAGVFCAVISHPADNLVSFLNNSKGASVGDAVKKLGLWGLFTRGLPLRIFMIGTLTGVQWVIYDAFKVAVGLPTTGGVAPAAANVVASSELAKA 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 172362 176025 + evm.model.ptg000007l.28 HCH9g0028 550660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0028 401 Gene3D Mitochondrial carrier domain 100 375 IPR023395 -
HCH9g0028 401 SUPERFAMILY Mitochondrial carrier 102 372 IPR023395 -
HCH9g0028 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 99 183 IPR018108 -
HCH9g0028 401 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 77 386 IPR044677 GO:0005315(PANTHER)|GO:0005315(InterPro)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
HCH9g0028 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 297 376 IPR018108 -
HCH9g0028 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 196 280 IPR018108 -
HCH9g0028 401 FunFam Phosphate carrier protein, mitochondrial 99 377 - -
HCH9g0028 401 Pfam Mitochondrial carrier protein 101 186 IPR018108 -
HCH9g0028 401 Pfam Mitochondrial carrier protein 197 284 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1107 HCH-Chr10:39933320 HCH9g0028 HCH-Chr9:172362 2.30E-162 dispersed
HCH7g0391 HCH-Chr7:2816573 HCH9g0028 HCH-Chr9:172362 1.70E-87 dispersed
HCH9g0028 HCH-Chr9:172362 HCH9g0166 HCH-Chr9:988436 8.80E-30 dispersed
HCH9g0028 HCH-Chr9:172362 HCH7g1687 HCH-Chr7:48780773 5.70E-13 transposed
HCH9g0028 HCH-Chr9:172362 HCH10g0148 HCH-Chr10:1224547 5.70E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0028 K15102 - csv:101221771 573.933