Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0048 ATGGATCCCAGAGGCTCAGAAACAAAGCAAACACAAGTAGTACCCAACTTTTTAAGCCTCCCACAGCAACAGCAACAACAACAACAATCAAACATGGGTGAAAACAAAGCAGCATCTGAAATCAAAGATTTCCAGATTGCAGTTGCAGAAAAAGAAGAAGGAAAGAAACAATTAGCTCCAAAGAGAAGCTCAAACAAAGACAGACACACCAAAGTGGAAGGCAGAGGAAGAAGGATAAGGATGCCAGCTTTATGTGCAGCAAGAATATTTCAATTGACAAGAGAATTGGGTCATAAATCTGATGGAGAAACAATACAGTGGTTGTTACAGCAAGCAGAACCATCAATTATAGCAGCAACAGGAAGTGGAACAATACCAGCCTCTGCTTTAGCAGCTGCAGGAGGCTCTGTTTCACAACAAGGAACTTCTCTATCAGCAGGATTGCATCAAAAAATGGAAGAATTAGGAGGAGGGTTAGGAGGGGGGTCCAGTATTGGGTCAGGAAGTAGGACCAGTTGGGCTATGGTAGGTGGTAATTTAGGAAGACCCCATTTGGCAACTGGTCTTTGGCCCTCTGTCAGTGGCTTTGGATTTCAGTCATCATCTGCTATTGCTGCTGCTCAATCAACTACTAATTTGGGAAATGAAACTTCAAATTACTTTCAGAAAATTGGGTTTCCAGGTTTTGACTTGCCTGCCACTGCCAACAACATGGGTCCTATGAGTTTTACATCATTTTTGGGTGGAAATAATAACCAACAATTACCTGGTTTGGAGCTTGGTTTGTCTCAAGATGGTCATATTGGGGTTTTAAATCCACAAGCTTTGAATCAGATTTATCAACAGATGGGACAGGCTAGTAGAGTTCATCACCAACAACAACATCAACCTCCTCCTAAGGATGATTCTCAAGGATCAGGATAG 924 42.1 MDPRGSETKQTQVVPNFLSLPQQQQQQQQSNMGENKAASEIKDFQIAVAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALAAAGGSVSQQGTSLSAGLHQKMEELGGGLGGGSSIGSGSRTSWAMVGGNLGRPHLATGLWPSVSGFGFQSSSAIAAAQSTTNLGNETSNYFQKIGFPGFDLPATANNMGPMSFTSFLGGNNNQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQASRVHHQQQHQPPPKDDSQGSG 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 277479 278402 - evm.model.ptg000007l.48 HCH9g0048 550680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0048 307 MobiDBLite consensus disorder prediction 1 75 - -
HCH9g0048 307 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 32 297 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
HCH9g0048 307 ProSiteProfiles TCP domain profile. 65 119 IPR017887 -
HCH9g0048 307 MobiDBLite consensus disorder prediction 283 307 - -
HCH9g0048 307 Pfam TCP family transcription factor 64 145 IPR017887 -
HCH9g0048 307 MobiDBLite consensus disorder prediction 45 75 - -
HCH9g0048 307 MobiDBLite consensus disorder prediction 1 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1182 HCH-Chr11:44152374 HCH9g0048 HCH-Chr9:277479 7.20E-27 dispersed
HCH13g1174 HCH-Chr13:38340984 HCH9g0048 HCH-Chr9:277479 2.30E-28 dispersed
HCH3g0046 HCH-Chr3:291674 HCH9g0048 HCH-Chr9:277479 1.40E-29 dispersed
HCH8g1306 HCH-Chr8:48103877 HCH9g0048 HCH-Chr9:277479 2.00E-29 dispersed
HCH9g0048 HCH-Chr9:277479 HCH9g0570 HCH-Chr9:3753646 2.40E-27 dispersed
HCH10g0096 HCH-Chr10:877941 HCH9g0048 HCH-Chr9:277479 1.30E-64 transposed
HCH1g1177 HCH-Chr1:59074558 HCH9g0048 HCH-Chr9:277479 4.80E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34106 PF03634 TCP 1.50E-30 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0048 - - - 0.0