Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0048 ATGGATCCCAGAGGCTCAGAAACAAAGCAAACACAAGTAGTACCCAACTTTTTAAGCCTCCCACAGCAACAGCAACAACAACAACAATCAAACATGGGTGAAAACAAAGCAGCATCTGAAATCAAAGATTTCCAGATTGCAGTTGCAGAAAAAGAAGAAGGAAAGAAACAATTAGCTCCAAAGAGAAGCTCAAACAAAGACAGACACACCAAAGTGGAAGGCAGAGGAAGAAGGATAAGGATGCCAGCTTTATGTGCAGCAAGAATATTTCAATTGACAAGAGAATTGGGTCATAAATCTGATGGAGAAACAATACAGTGGTTGTTACAGCAAGCAGAACCATCAATTATAGCAGCAACAGGAAGTGGAACAATACCAGCCTCTGCTTTAGCAGCTGCAGGAGGCTCTGTTTCACAACAAGGAACTTCTCTATCAGCAGGATTGCATCAAAAAATGGAAGAATTAGGAGGAGGGTTAGGAGGGGGGTCCAGTATTGGGTCAGGAAGTAGGACCAGTTGGGCTATGGTAGGTGGTAATTTAGGAAGACCCCATTTGGCAACTGGTCTTTGGCCCTCTGTCAGTGGCTTTGGATTTCAGTCATCATCTGCTATTGCTGCTGCTCAATCAACTACTAATTTGGGAAATGAAACTTCAAATTACTTTCAGAAAATTGGGTTTCCAGGTTTTGACTTGCCTGCCACTGCCAACAACATGGGTCCTATGAGTTTTACATCATTTTTGGGTGGAAATAATAACCAACAATTACCTGGTTTGGAGCTTGGTTTGTCTCAAGATGGTCATATTGGGGTTTTAAATCCACAAGCTTTGAATCAGATTTATCAACAGATGGGACAGGCTAGTAGAGTTCATCACCAACAACAACATCAACCTCCTCCTAAGGATGATTCTCAAGGATCAGGATAG 924 42.1 MDPRGSETKQTQVVPNFLSLPQQQQQQQQSNMGENKAASEIKDFQIAVAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALAAAGGSVSQQGTSLSAGLHQKMEELGGGLGGGSSIGSGSRTSWAMVGGNLGRPHLATGLWPSVSGFGFQSSSAIAAAQSTTNLGNETSNYFQKIGFPGFDLPATANNMGPMSFTSFLGGNNNQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQASRVHHQQQHQPPPKDDSQGSG 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 277479 278402 - evm.model.ptg000007l.48 HCH9g0048 550680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0048 307 MobiDBLite consensus disorder prediction 1 75 - -
HCH9g0048 307 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 32 297 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
HCH9g0048 307 ProSiteProfiles TCP domain profile. 65 119 IPR017887 -
HCH9g0048 307 MobiDBLite consensus disorder prediction 283 307 - -
HCH9g0048 307 Pfam TCP family transcription factor 64 145 IPR017887 -
HCH9g0048 307 MobiDBLite consensus disorder prediction 45 75 - -
HCH9g0048 307 MobiDBLite consensus disorder prediction 1 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0048 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1182 HCH-Chr11:44152374 HCH9g0048 HCH-Chr9:277479 7.20E-27 dispersed
HCH13g1174 HCH-Chr13:38340984 HCH9g0048 HCH-Chr9:277479 2.30E-28 dispersed
HCH3g0046 HCH-Chr3:291674 HCH9g0048 HCH-Chr9:277479 1.40E-29 dispersed
HCH8g1306 HCH-Chr8:48103877 HCH9g0048 HCH-Chr9:277479 2.00E-29 dispersed
HCH9g0048 HCH-Chr9:277479 HCH9g0570 HCH-Chr9:3753646 2.40E-27 dispersed
HCH10g0096 HCH-Chr10:877941 HCH9g0048 HCH-Chr9:277479 1.30E-64 transposed
HCH1g1177 HCH-Chr1:59074558 HCH9g0048 HCH-Chr9:277479 4.80E-28 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0544 . 28 238 TCP Transcription Factor Family AT5G23280 57.8 2.0e-56 216.1
HCH10g1153 . 22 252 TCP Transcription Factor Family AT5G23280 54.5 2.4e-54 209.1
HCH13g1174 . 64 332 TCP Transcription Factor Family AT2G45680 55.0 3.5e-62 235.7
HCH1g0935 . 76 180 TCP Transcription Factor Family AT3G47620 85.0 1.9e-42 170.6
HCH3g0046 . 52 161 TCP Transcription Factor Family AT3G47620 79.3 1.9e-39 160.6
HCH1g1177 . 127 209 TCP Transcription Factor Family AT3G47620 89.2 2.6e-36 150.2
HCH9g0048 . 1 307 TCP Transcription Factor Family AT3G27010 56.5 1.9e-67 253.1
HCH1g0544 . 25 236 TCP Transcription Factor Family AT5G08330 60.9 3.3e-56 215.3
HCH10g1153 . 1 251 TCP Transcription Factor Family AT5G08330 51.9 2.1e-55 212.6
HCH8g1238 . 33 227 TCP Transcription Factor Family AT5G60970 51.3 2.5e-44 176.4
HCH9g0307 . 31 131 TCP Transcription Factor Family AT3G02150 75.7 2.0e-38 156.8
HCH6g0648 . 21 224 TCP Transcription Factor Family AT2G31070 51.4 1.7e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34106 PF03634 TCP 1.50E-30 No_clan HCH TF