Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0052 ATGGAGAATTATCAAATGTTCTTCCCTTGCCCATCTGGTGCTAATTTGTCAGCTTTTCCTGATGATCTATCTCCCACCATGGAAACTGCAGGGCCTCATCATCTTCTTCTTGACAACTTTCACGTCGCTGGTGGTAATTACGATCACCATTCAAATGGGTTCTCGGGGCTGAAAACGGAGGTGGAGTTTAATAATTATATGAGTGTCGGCGGCGGAGGTGGCGTCTTGGAATCAGGAAATGAATTGAAAGTAGATAAAAAGAAAGGGGAGAAGAAGAAGATGAGGAAACCAAGATACGCTTTTCAAACGAGGAGTCAAGTTGATATACTTGATGATGGGTATCGTTGGAGGAAATATGGTCAAAAGGCTGTTAAAAACAACAAATTTCCAAGGAGCTATTACCGGTGCACACATCAAGGATGCAATGTGAAGAAGCAAGTGCAGAGGCTAACAAGGGATGAAGGAGTAGTGGTTACTACATACGAAGGGATGCACAATCACTCCATTGATAGGCCAACTGATAACTTCGAACAAATTTTGAGTCGAATGCAAATCTACACTCCTTTCTAA 570 42.28 MENYQMFFPCPSGANLSAFPDDLSPTMETAGPHHLLLDNFHVAGGNYDHHSNGFSGLKTEVEFNNYMSVGGGGGVLESGNELKVDKKKGEKKKMRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHNHSIDRPTDNFEQILSRMQIYTPF 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 321993 322790 + evm.model.ptg000007l.52 HCH9g0052 550684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0052 189 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 81 170 IPR044810 GO:0003700(InterPro)
HCH9g0052 189 SMART WRKY_cls 110 169 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH9g0052 189 ProSiteProfiles WRKY domain profile. 105 170 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH9g0052 189 Pfam WRKY DNA -binding domain 111 167 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH9g0052 189 SUPERFAMILY WRKY DNA-binding domain 102 169 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH9g0052 189 Gene3D WRKY domain 95 170 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH9g0052 189 FunFam WRKY transcription factor 57 96 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1222 HCH-Chr6:46631162 HCH9g0052 HCH-Chr9:321993 5.90E-30 dispersed
HCH7g1019 HCH-Chr7:41611714 HCH9g0052 HCH-Chr9:321993 1.20E-27 dispersed
HCH7g1659 HCH-Chr7:48648061 HCH9g0052 HCH-Chr9:321993 9.10E-32 dispersed
HCH7g1795 HCH-Chr7:49521096 HCH9g0052 HCH-Chr9:321993 1.50E-29 dispersed
HCH8g1315 HCH-Chr8:48154728 HCH9g0052 HCH-Chr9:321993 2.20E-16 dispersed
HCH9g0052 HCH-Chr9:321993 HCH9g0683 HCH-Chr9:4558709 5.80E-16 dispersed
HCH13g0949 HCH-Chr13:13316151 HCH9g0052 HCH-Chr9:321993 2.20E-46 wgd
HCH5g1190 HCH-Chr5:40914156 HCH9g0052 HCH-Chr9:321993 4.40E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34107 PF03106 WRKY 5.00E-26 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0052 - - - 0.0