Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH9g0053 | ATGGATTGGGATTGGAGAAAATTTTCTGGGCAAAACCAACAACTTCAAGTTTCCAGCTTTTCTGACTCAATTAGCTCCACTCAGAAAATTGGAGATGGGGTTTTAAAGGGCAACGTCCATGAGACCAAATTAAGCTCTAATTCGAGCTCCAGCTTTCATGGATCCTCGAAAAGGACTCGTCTTCAAAATGGAACACAAAACCAGACATGTTTGGTCGATGGTTGTGATTCAGACCTTAGTAATTGTAAGGAATATCATCGTCGGCATAGGGTCTGTGATTTCCATTCCAAAACCCCAGTTGTGATTGTGAGAGGTGAGGAGAAAAGATTCTGCCAACAGTGCAGCAGATTCCATTCTCTGGGTGAGTTTGATGAGGTTAAGAGAAGCTGCAGAAAACGTCTCGATGGACATAATCGTCGCCGGAGAAAACCTCAGCCGGAGTCTTTGTTTTTGAGTTCTAGAGATTTTCTGTCCAATTGCAAAGGTCCCATTGTGCTACAATTCAGTAATCCACAGATTCACGTAAATGATATTGGTAGAAGTTTATGGCCAGCCACTGCAAGAACTGATAAAAAGAAAGCTATGATTCCACCAAATTCCACTGCTTGCTTCAACTATGGAGGAGATAAGCAGTTTCCTGTCCTGCAAATCAATGGAAATGGCAATGGAAATGGCAAGCACATGGCTTCTCAGATATCTTTTTGTCAGTCACTTCCTGATGCCAGTTTTGCAGGAAGTGATTTGGGCAGCTGCAGAATGCTGCCGGCTGATATGTTGCCAACCGTTGACTCGGGTTGTGCTCTCTATCTTCTGTCATCGTATCCTGGACAAGCTCTTCCGGATGCTGGTCTGAGCTCCTTGGTTCAGTCCCATCGGAATCTTCCAGTCCAAACTCAAGACTCTGTGCTGCAATTCAATAGCCTAAGTGAGTCATCTGGCTCGTTTGGTATGAAGGACAAGCCTGTTTGTAAAACCAACATTGATGGTGATTTCATGCGTGAAATGGAGGAACCTGATAGCTTCTTCGAAAGTGAGGTTCCACGCAAGTTTCCCATTTCTTGGGAGTAA | 1068 | 44.1 | MDWDWRKFSGQNQQLQVSSFSDSISSTQKIGDGVLKGNVHETKLSSNSSSSFHGSSKRTRLQNGTQNQTCLVDGCDSDLSNCKEYHRRHRVCDFHSKTPVVIVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFLSSRDFLSNCKGPIVLQFSNPQIHVNDIGRSLWPATARTDKKKAMIPPNSTACFNYGGDKQFPVLQINGNGNGNGKHMASQISFCQSLPDASFAGSDLGSCRMLPADMLPTVDSGCALYLLSSYPGQALPDAGLSSLVQSHRNLPVQTQDSVLQFNSLSESSGSFGMKDKPVCKTNIDGDFMREMEEPDSFFESEVPRKFPISWE | 355 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 325193 | 326530 | + | evm.model.ptg000007l.53 | HCH9g0053 | 550685 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH9g0053 | 355 | ProSiteProfiles | Zinc finger SBP-type profile. | 67 | 144 | IPR004333 | GO:0003677(InterPro) | |
| HCH9g0053 | 355 | FunFam | Squamosa promoter-binding-like protein 14 | 61 | 131 | - | - | |
| HCH9g0053 | 355 | Gene3D | - | 61 | 131 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| HCH9g0053 | 355 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 1 | 276 | IPR044817 | GO:0003677(InterPro) | |
| HCH9g0053 | 355 | SUPERFAMILY | SBT domain | 69 | 149 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| HCH9g0053 | 355 | Pfam | SBP domain | 70 | 143 | IPR004333 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH9g0053 | HCH-Chr9:325193 | HCH9g1142 | HCH-Chr9:15235580 | 5.20E-34 | dispersed | |
| HCH1g1155 | HCH-Chr1:58949927 | HCH9g0053 | HCH-Chr9:325193 | 8.80E-26 | wgd | |
| HCH3g0456 | HCH-Chr3:2905647 | HCH9g0053 | HCH-Chr9:325193 | 1.50E-40 | wgd | |
| HCH5g1191 | HCH-Chr5:41002960 | HCH9g0053 | HCH-Chr9:325193 | 5.20E-41 | wgd | |
| HCH8g1492 | HCH-Chr8:49214716 | HCH9g0053 | HCH-Chr9:325193 | 1.40E-40 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34108 | PF03110 | SBP | 5.30E-30 | No_clan | HCH | TF |
Pathway information