Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0053 ATGGATTGGGATTGGAGAAAATTTTCTGGGCAAAACCAACAACTTCAAGTTTCCAGCTTTTCTGACTCAATTAGCTCCACTCAGAAAATTGGAGATGGGGTTTTAAAGGGCAACGTCCATGAGACCAAATTAAGCTCTAATTCGAGCTCCAGCTTTCATGGATCCTCGAAAAGGACTCGTCTTCAAAATGGAACACAAAACCAGACATGTTTGGTCGATGGTTGTGATTCAGACCTTAGTAATTGTAAGGAATATCATCGTCGGCATAGGGTCTGTGATTTCCATTCCAAAACCCCAGTTGTGATTGTGAGAGGTGAGGAGAAAAGATTCTGCCAACAGTGCAGCAGATTCCATTCTCTGGGTGAGTTTGATGAGGTTAAGAGAAGCTGCAGAAAACGTCTCGATGGACATAATCGTCGCCGGAGAAAACCTCAGCCGGAGTCTTTGTTTTTGAGTTCTAGAGATTTTCTGTCCAATTGCAAAGGTCCCATTGTGCTACAATTCAGTAATCCACAGATTCACGTAAATGATATTGGTAGAAGTTTATGGCCAGCCACTGCAAGAACTGATAAAAAGAAAGCTATGATTCCACCAAATTCCACTGCTTGCTTCAACTATGGAGGAGATAAGCAGTTTCCTGTCCTGCAAATCAATGGAAATGGCAATGGAAATGGCAAGCACATGGCTTCTCAGATATCTTTTTGTCAGTCACTTCCTGATGCCAGTTTTGCAGGAAGTGATTTGGGCAGCTGCAGAATGCTGCCGGCTGATATGTTGCCAACCGTTGACTCGGGTTGTGCTCTCTATCTTCTGTCATCGTATCCTGGACAAGCTCTTCCGGATGCTGGTCTGAGCTCCTTGGTTCAGTCCCATCGGAATCTTCCAGTCCAAACTCAAGACTCTGTGCTGCAATTCAATAGCCTAAGTGAGTCATCTGGCTCGTTTGGTATGAAGGACAAGCCTGTTTGTAAAACCAACATTGATGGTGATTTCATGCGTGAAATGGAGGAACCTGATAGCTTCTTCGAAAGTGAGGTTCCACGCAAGTTTCCCATTTCTTGGGAGTAA 1068 44.1 MDWDWRKFSGQNQQLQVSSFSDSISSTQKIGDGVLKGNVHETKLSSNSSSSFHGSSKRTRLQNGTQNQTCLVDGCDSDLSNCKEYHRRHRVCDFHSKTPVVIVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFLSSRDFLSNCKGPIVLQFSNPQIHVNDIGRSLWPATARTDKKKAMIPPNSTACFNYGGDKQFPVLQINGNGNGNGKHMASQISFCQSLPDASFAGSDLGSCRMLPADMLPTVDSGCALYLLSSYPGQALPDAGLSSLVQSHRNLPVQTQDSVLQFNSLSESSGSFGMKDKPVCKTNIDGDFMREMEEPDSFFESEVPRKFPISWE 355
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 325193 326530 + evm.model.ptg000007l.53 HCH9g0053 550685
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0053 355 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677(InterPro)
HCH9g0053 355 FunFam Squamosa promoter-binding-like protein 14 61 131 - -
HCH9g0053 355 Gene3D - 61 131 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH9g0053 355 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 276 IPR044817 GO:0003677(InterPro)
HCH9g0053 355 SUPERFAMILY SBT domain 69 149 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH9g0053 355 Pfam SBP domain 70 143 IPR004333 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0053 HCH-Chr9:325193 HCH9g1142 HCH-Chr9:15235580 5.20E-34 dispersed
HCH1g1155 HCH-Chr1:58949927 HCH9g0053 HCH-Chr9:325193 8.80E-26 wgd
HCH3g0456 HCH-Chr3:2905647 HCH9g0053 HCH-Chr9:325193 1.50E-40 wgd
HCH5g1191 HCH-Chr5:41002960 HCH9g0053 HCH-Chr9:325193 5.20E-41 wgd
HCH8g1492 HCH-Chr8:49214716 HCH9g0053 HCH-Chr9:325193 1.40E-40 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34108 PF03110 SBP 5.30E-30 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0053 - - - 0.0