Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0053 ATGGATTGGGATTGGAGAAAATTTTCTGGGCAAAACCAACAACTTCAAGTTTCCAGCTTTTCTGACTCAATTAGCTCCACTCAGAAAATTGGAGATGGGGTTTTAAAGGGCAACGTCCATGAGACCAAATTAAGCTCTAATTCGAGCTCCAGCTTTCATGGATCCTCGAAAAGGACTCGTCTTCAAAATGGAACACAAAACCAGACATGTTTGGTCGATGGTTGTGATTCAGACCTTAGTAATTGTAAGGAATATCATCGTCGGCATAGGGTCTGTGATTTCCATTCCAAAACCCCAGTTGTGATTGTGAGAGGTGAGGAGAAAAGATTCTGCCAACAGTGCAGCAGATTCCATTCTCTGGGTGAGTTTGATGAGGTTAAGAGAAGCTGCAGAAAACGTCTCGATGGACATAATCGTCGCCGGAGAAAACCTCAGCCGGAGTCTTTGTTTTTGAGTTCTAGAGATTTTCTGTCCAATTGCAAAGGTCCCATTGTGCTACAATTCAGTAATCCACAGATTCACGTAAATGATATTGGTAGAAGTTTATGGCCAGCCACTGCAAGAACTGATAAAAAGAAAGCTATGATTCCACCAAATTCCACTGCTTGCTTCAACTATGGAGGAGATAAGCAGTTTCCTGTCCTGCAAATCAATGGAAATGGCAATGGAAATGGCAAGCACATGGCTTCTCAGATATCTTTTTGTCAGTCACTTCCTGATGCCAGTTTTGCAGGAAGTGATTTGGGCAGCTGCAGAATGCTGCCGGCTGATATGTTGCCAACCGTTGACTCGGGTTGTGCTCTCTATCTTCTGTCATCGTATCCTGGACAAGCTCTTCCGGATGCTGGTCTGAGCTCCTTGGTTCAGTCCCATCGGAATCTTCCAGTCCAAACTCAAGACTCTGTGCTGCAATTCAATAGCCTAAGTGAGTCATCTGGCTCGTTTGGTATGAAGGACAAGCCTGTTTGTAAAACCAACATTGATGGTGATTTCATGCGTGAAATGGAGGAACCTGATAGCTTCTTCGAAAGTGAGGTTCCACGCAAGTTTCCCATTTCTTGGGAGTAA 1068 44.1 MDWDWRKFSGQNQQLQVSSFSDSISSTQKIGDGVLKGNVHETKLSSNSSSSFHGSSKRTRLQNGTQNQTCLVDGCDSDLSNCKEYHRRHRVCDFHSKTPVVIVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFLSSRDFLSNCKGPIVLQFSNPQIHVNDIGRSLWPATARTDKKKAMIPPNSTACFNYGGDKQFPVLQINGNGNGNGKHMASQISFCQSLPDASFAGSDLGSCRMLPADMLPTVDSGCALYLLSSYPGQALPDAGLSSLVQSHRNLPVQTQDSVLQFNSLSESSGSFGMKDKPVCKTNIDGDFMREMEEPDSFFESEVPRKFPISWE 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 325193 326530 + evm.model.ptg000007l.53 HCH9g0053 550685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0053 355 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677(InterPro)
HCH9g0053 355 FunFam Squamosa promoter-binding-like protein 14 61 131 - -
HCH9g0053 355 Gene3D - 61 131 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH9g0053 355 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 276 IPR044817 GO:0003677(InterPro)
HCH9g0053 355 SUPERFAMILY SBT domain 69 149 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH9g0053 355 Pfam SBP domain 70 143 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0053 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0053 HCH-Chr9:325193 HCH9g1142 HCH-Chr9:15235580 5.20E-34 dispersed
HCH1g1155 HCH-Chr1:58949927 HCH9g0053 HCH-Chr9:325193 8.80E-26 wgd
HCH3g0456 HCH-Chr3:2905647 HCH9g0053 HCH-Chr9:325193 1.50E-40 wgd
HCH5g1191 HCH-Chr5:41002960 HCH9g0053 HCH-Chr9:325193 5.20E-41 wgd
HCH8g1492 HCH-Chr8:49214716 HCH9g0053 HCH-Chr9:325193 1.40E-40 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g0405 . 179 1018 SBP-box Gene Family AT2G47070 52.0 2.9e-228 788.5
HCH6g0405 . 24 1018 SBP-box Gene Family AT3G60030 51.4 5.2e-259 891.0
HCH10g0084 . 34 184 SBP-box Gene Family AT5G50570 55.2 3.4e-41 166.0
HCH9g0053 . 55 169 SBP-box Gene Family AT5G50570 66.1 1.2e-38 157.5
HCH6g0405 . 179 1018 SBP-box Gene Family AT2G47070 52.0 2.9e-228 788.5
HCH6g0405 . 24 1018 SBP-box Gene Family AT3G60030 51.4 5.2e-259 891.0
HCH10g0084 . 34 184 SBP-box Gene Family AT5G50570 55.2 3.4e-41 166.0
HCH9g0053 . 55 169 SBP-box Gene Family AT5G50570 66.1 1.2e-38 157.5
HCH10g0084 . 34 184 SBP-box Gene Family AT5G50670 55.2 3.4e-41 166.0
HCH9g0053 . 55 169 SBP-box Gene Family AT5G50670 66.1 1.2e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006434 2 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 3 1 1 2 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34108 PF03110 SBP 5.30E-30 No_clan HCH TF