Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0113 ATGGGGTCTGGAAATGGCTTTTATTCGACTGCTGAATTCAATTTGGATGCTAAATGGTTGATTGATCCAAAGCATCTTTTTGTTGGGCCAAAGATTGGGGAAGGTGCCCATGCTAAGGTGTACGAGGGCAAGTACAAAAATAAGATAGTGGCTATTAAAATGGTTGGTAGAGGAGATACTCCTGAGAGGATGGCCAAAAGAGAAGATCGGTTTGCCAGAGAGGTTGCAATGTTGTCTAGAGTTCAACATAAGAATTTAGTGAAGTTTATTGGGGCTTGTAAGGAACCTATGATGGTCATAGTGACTGAGTTGCTGTCAGGTGGGACATTACGCAAGTACCTTTTTAATTTGAGGCCGAATAGCCTGGAAATTCACACGGCAATCGGGTTTGCTCTTGATATTGCTCGTGCAATGGAGTGCTTACACTCCCATGGGATCATTCACCGGGACCTTAAACCTGAGAACTTGATCTTGACTGCAGACCTTAAAACAGTTAAGCTTGCTGATTTCGGTTTAGCAAGAGAAGAGTCAGTAACAGAGATGATGACTGCTGAAACAGGAACATATAGGTGGATGGCTCCAGAGCTATATAGCACAGTCACTTTAAAACATGGAGATAAAAAGCATTATAATCATAAAGTGGATGCCTACAGCTTTGCCATTGTATTGTGGGAACTCATCCTTAACAAGTTGCCTTTTGAAGGCATGTCAAATTTACAGGCAGCATACGCAGCTGCTTTTAAGAACATGAGGCCTAATGCCAAAGAGCTCCCGGAGGATTTGGCTTCAATAGTGACATCATGTTGGAGAGAGGATCCAAATACCAGGCCAAACTTCAGCCAGATTATACAGATGCTGTTGCAATATCTTTCTAGAATCTCACCACGACAACCTGTAATCCCACCGCGAATATGTGCTTCAGAAAATGTCGTGATGCCACCAGACTCTCCTGGAACAATTTCCTTGATGGCTGCTGCTACTGCTAGTCATGGATCAGGAGAAACCCCGCATGGAATGATGGAAGACAACCCAAAAACTTCCTTCTTCTGCTTTAACAAGTGTTATTAA 1068 42.98 MGSGNGFYSTAEFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNKIVAIKMVGRGDTPERMAKREDRFAREVAMLSRVQHKNLVKFIGACKEPMMVIVTELLSGGTLRKYLFNLRPNSLEIHTAIGFALDIARAMECLHSHGIIHRDLKPENLILTADLKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNKLPFEGMSNLQAAYAAAFKNMRPNAKELPEDLASIVTSCWREDPNTRPNFSQIIQMLLQYLSRISPRQPVIPPRICASENVVMPPDSPGTISLMAAATASHGSGETPHGMMEDNPKTSFFCFNKCY 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 592760 594654 - evm.model.ptg000007l.113 HCH9g0113 550745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0113 355 PANTHER SERINE-THREONINE PROTEIN KINASE 20 287 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH9g0113 355 SUPERFAMILY Protein kinase-like (PK-like) 17 310 IPR011009 -
HCH9g0113 355 FunFam Kinase suppressor of Ras 1 15 105 - -
HCH9g0113 355 Gene3D Transferase(Phosphotransferase) domain 1 106 298 - -
HCH9g0113 355 FunFam serine/threonine-protein kinase HT1 107 307 - -
HCH9g0113 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0113 355 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524(InterPro)
HCH9g0113 355 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0113 355 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0113 355 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0113 355 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0113 355 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
HCH9g0113 355 CDD STKc_MAP3K-like 32 286 - -
HCH9g0113 355 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0113 355 Pfam Protein tyrosine and serine/threonine kinase 30 286 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0113 355 SMART serkin_6 26 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0030 HCH-Chr11:748463 HCH9g0113 HCH-Chr9:592760 1.50E-113 dispersed
HCH14g0551 HCH-Chr14:34471222 HCH9g0113 HCH-Chr9:592760 8.60E-80 dispersed
HCH8g1383 HCH-Chr8:48541098 HCH9g0113 HCH-Chr9:592760 2.20E-61 dispersed
HCH9g0113 HCH-Chr9:592760 HCH7g1242 HCH-Chr7:45244153 2.80E-40 dispersed
HCH13g0856 HCH-Chr13:9061632 HCH9g0113 HCH-Chr9:592760 3.70E-157 wgd
HCH8g1427 HCH-Chr8:48871440 HCH9g0113 HCH-Chr9:592760 3.50E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81737 PF07714 PK_Tyr_Ser-Thr 1.80E-57 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0113 - - - 0.0