Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0115 ATGGAGTCAATTGTTGATGGTATGAGTTCTTTACTGAAAACTCCGAACCCGACTTCTACGTCAAGGATTCCCAAGTCGTCTCGCCATCCTTCTCCTAAACAATCTAGAGATGAAGCAACTTCTTCAACATCTAATGTTAGTTCTCAAAATTATGGTGTGAAGACTGGTCGTCAGCCAAATGGTTCGGTAACTAATCAAACGCATTCTTACAATGTGAACCGTGATGATGTGGGGGTTGAAGGTTTAACTAATAAGAAAAATCATTCTTATGTTTCCAATAAGGGGAAATCCGAGCTCGTAAACTCAACTGATATTTCATATAAATCAGCCGAAACTTCTTTACCGAATAAAGTTCCTTTGGTTGGAGGTGTAAAGAATTCTCCCATGAAACATCCTGTTGATGATTCCAAGGATTGTAGTTCAAGTTGCTCGGGAGAATCTGGGAGTTTAGTCTTAAACACATCTAAAGGAGTTGCCATGGAATCAAATGGTAAACCGATGTCTCAGCCAACCGGAATCTCTTGTCCAAGTCCTCAGAGTAGCTTATATTCCACAAATTTTTATGCAGAAGCCAAACAAAGTTTCTCAAACACAGAAGTCAGTGAATGTACAAGCAGCATTGAAAAGTCCTGTGAAAGTGTCGAGATCACAAATTCTTTTGATCTCGATAGAAGCAGGAAAACCAGTGTTTACCGAGGCAGCACTGGAAGTGATATTAGTGATGAGAGCAACTCAAGTAGTTTAAGCAATCCCATGTATAAGCCCCACAAGGCAAATGATACAAGATGGGAAGCAATGCAAGTTGTTAGATCTCATGATGGGATGTTAGGCCTGAATCATTTCAGGTTATTGCGGAGACTGGGATGTGGAGATATCGGCAGTGTTTATCTTTCTGAGTTAACTGGTACCAAAACTTACTTCGCCATGAAGGTTATGGATAAAGCCGCTTTGGCAAGTAGAAAGAAGCTTCTGAGGGCTCAGACAGAGAGAGAAATATTGCAATCTCTGGATCATCCATTCCTACCAACGTTGTATACACACTTCGAGACAGAGAAGTTCTCTTGTTTGGTAATGGAGTTTTGCCCCGGGGGAGACTTGCATGCGCTTAGGCAAAGACAACCTGGAAAGTTTTTTCCAGAGCACGCTGCGAGGTTTTATGTGGCTGAAGTTCTCCTTGCATTGGAGTATCTGCACATGCTTGGGATCATCTACAGAGACCTAAAGCCTGAAAATGTCTTAGTGAGGGATGATGGACATATAATGTTATCTGATTTTGACCTCTCTCTTAGATGTGCCGTCTCCCCAACCCTTGTTAAATCATCAAACTCAGGTTTAGAATCTAAAAGCTCAGGATACTGTATCCAGCCTGCTTGCATAGAACCAACTTGCATAATGCAGCCAGATTGTATTCAGCCAGCATGTTTTACACCCCGCTTCTTAAGTAGACACAAGAAAGAAAAAAAGGTCAAATCAAAGAGTGAAATATACCATCAAGTGAGCCCTCTACCGGAACTCATTGCTGAACCCACGAGCGCAAGGTCGATGTCCTTTGTTGGTACACATGAGTACCTGGCACCTGAAATCATAAAAGGTGAAGGCCATGGTAGTGCTGTGGATTGGTGGACATTTGGGATCTTTCTCTATGAGCTTTTGTTTGGTAGAACTCCATTCAAAGGGGCGGGGAATCGTGCTACTTTGTTTAACGTGGTTGGTCAGCCGTTGAGATTTCCAGAGTCTCCGTCTGTAAGCTTTGCAGCTAGGGACTTGATCAGAGGTTTGCTTGTAAAAGAACCACAACATCGGCTCGCTTATAGACGTGGTGCTACAGAAATTAAGCAACATCCATTCTTTCAGAGCGTGAATTGGGCACTCATTCGCTGTGCAAATCCACCAGAGGTGCCAAAAGTAGAGACAATCGATTTCTCCTCAAGAATGGAGGCACCACACACACCGGCCAGTGAAAAACCGCCGGGAGTTGATGTGAAGCCTTCAGGTAATTATTTAGAGATTGACTTCTTTTGA 2022 42.78 MESIVDGMSSLLKTPNPTSTSRIPKSSRHPSPKQSRDEATSSTSNVSSQNYGVKTGRQPNGSVTNQTHSYNVNRDDVGVEGLTNKKNHSYVSNKGKSELVNSTDISYKSAETSLPNKVPLVGGVKNSPMKHPVDDSKDCSSSCSGESGSLVLNTSKGVAMESNGKPMSQPTGISCPSPQSSLYSTNFYAEAKQSFSNTEVSECTSSIEKSCESVEITNSFDLDRSRKTSVYRGSTGSDISDESNSSSLSNPMYKPHKANDTRWEAMQVVRSHDGMLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNSGLESKSSGYCIQPACIEPTCIMQPDCIQPACFTPRFLSRHKKEKKVKSKSEIYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPKVETIDFSSRMEAPHTPASEKPPGVDVKPSGNYLEIDFF 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 603573 606267 - evm.model.ptg000007l.115 HCH9g0115 550747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0115 673 MobiDBLite consensus disorder prediction 118 140 - -
HCH9g0115 673 Gene3D Transferase(Phosphotransferase) domain 1 365 432 - -
HCH9g0115 673 MobiDBLite consensus disorder prediction 9 28 - -
HCH9g0115 673 FunFam serine/threonine-protein kinase D6PK-like 365 432 - -
HCH9g0115 673 FunFam serine/threonine-protein kinase D6PK-like 512 635 - -
HCH9g0115 673 ProSiteProfiles Protein kinase domain profile. 281 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0115 673 MobiDBLite consensus disorder prediction 230 254 - -
HCH9g0115 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0115 673 FunFam Serine/threonine-protein kinase D6PK-like 279 364 - -
HCH9g0115 673 SUPERFAMILY Protein kinase-like (PK-like) 254 648 IPR011009 -
HCH9g0115 673 MobiDBLite consensus disorder prediction 230 256 - -
HCH9g0115 673 MobiDBLite consensus disorder prediction 1 90 - -
HCH9g0115 673 Gene3D Transferase(Phosphotransferase) domain 1 512 635 - -
HCH9g0115 673 PANTHER FLIPPASE KINASE 1-RELATED 113 639 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH9g0115 673 Gene3D Phosphorylase Kinase; domain 1 279 364 - -
HCH9g0115 673 Pfam Protein kinase domain 514 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0115 673 Pfam Protein kinase domain 282 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0115 673 MobiDBLite consensus disorder prediction 644 663 - -
HCH9g0115 673 CDD STKc_phototropin_like 280 636 - -
HCH9g0115 673 SMART serkin_6 281 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0115 673 MobiDBLite consensus disorder prediction 36 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0100 HCH-Chr14:19151352 HCH9g0115 HCH-Chr9:603573 2.10E-151 dispersed
HCH2g0628 HCH-Chr2:50079413 HCH9g0115 HCH-Chr9:603573 7.40E-96 dispersed
HCH6g0888 HCH-Chr6:43684662 HCH9g0115 HCH-Chr9:603573 2.50E-187 dispersed
HCH6g0968 HCH-Chr6:44503937 HCH9g0115 HCH-Chr9:603573 1.10E-171 dispersed
HCH7g0369 HCH-Chr7:2662668 HCH9g0115 HCH-Chr9:603573 1.40E-89 dispersed
HCH9g0115 HCH-Chr9:603573 HCH9g0508 HCH-Chr9:3243154 1.50E-146 dispersed
HCH9g0115 HCH-Chr9:603573 HCH3g1038 HCH-Chr3:14475731 1.10E-197 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81738 PF00069 Pkinase 8.70E-36 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0115 K08286 - csv:101219962 1098.96