Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0122 ATGGCCGGTCTTGAAGAATTGAAGAAGAAGCTTACCCCATTATTTGATGCTGAAAAGGGACTTTCTTTGGATTCAACTTTAGATGTTTCTGATTCCTATACGTTTTCAGATAGTGGAACTGTTAATTTGCTAAGTAGATCATATGGGGTTTACAATATTAATGAGCTTGGGCTGCAAAAATGCACGTCTTGGCTCGAAGACAACAATTTGGGTAGTAGTGAAAGAACGTATCGATGTGGTTCTCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGGGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATTATGGCATTGAAGAAGATTAATATCTTTGAGAAGGAGAAAAGACAGCAGCTTCTTACTGAGATACGGACACTTTGTGAAGCCCCTTGTTATCAGGGTCTTGTAGAGTTTCATGGGGCATTTTATACCCCTGACTCTGGGCAAATAAGCATAGCGTTGGAGTACATGGATGGAGGGTCATTAGCAGATATCCTGCGGTTGAAAAAATGCATACCCGAGCCGGAACTTTCCTCCATGTTTCAAACGCTTCTTCATGGACTAAACTACTTACATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTGTAAATCTTAAGGGTGAGCCAAAAATTACAGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTTGTCGGAACTGTCACATATATGTCTCCTGAGCGAATCCGAAATAAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGTCTTGCACTCTTTGAGTGTGGTACTGGAGAATTTCCATATACAGCTACCGAAGGTCCTGTAAATCTTATGTTGCAGATTTTGGATGACCCATCGCCATCGCCATCAAAACAAAAGTTTTCGCCGGAGTTTTGTTCATTTATTGATGCCTGCTTGCAAAAGGATGCAGATGCTAGGCCAACAGCTGAGCAGCTGCTTTCACACCCATTTATCCGAAAATACGAGGATGAACAAGTAGATTTGTCAGCATTTGTCCAGAGTGTGTTTGATCCAATACAGAGGATGAAAGACTTGGCTGATATGTTGACCATTCATTATTACTTACTCTTTGATGGAACTGATGAAGTCTGGCATCATTCAAAAGCTTTATACAATGAAAGTTCAACTTTAAGTTTTTCTGGGAAGCAATTTTCTGGTCCAGATGGTATCTTCGCCACTCTATCTGATATTCGGAGTACATTAGCTGGGGACTGGCCTCTTGAAAAACTAGTTCATGTCGTCGAAAAACTTCAATGCCGAGCTCATGGTCGAGATGGAGTTGCTATAAGGGTGTCAGGATCCTTCATCATTGGGAATCAGTTTCTCATTTGTGGAGACGGGGTACAAGTCGAGGGATTGCCAAATTTTAAGGATCTTTCTATTGACATTGCGAGTAAAAGAATGGGATCCTTCCGAGAGCAGTTCATCATTGAACCGAGCAATCTTATCGGTCGCTACTTCATAGCCAAACAAGAGCTTTATATAATTCAGTAG 1560 41.35 MAGLEELKKKLTPLFDAEKGLSLDSTLDVSDSYTFSDSGTVNLLSRSYGVYNINELGLQKCTSWLEDNNLGSSERTYRCGSREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCYQGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRLKKCIPEPELSSMFQTLLHGLNYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNKSYSYPADIWSLGLALFECGTGEFPYTATEGPVNLMLQILDDPSPSPSKQKFSPEFCSFIDACLQKDADARPTAEQLLSHPFIRKYEDEQVDLSAFVQSVFDPIQRMKDLADMLTIHYYLLFDGTDEVWHHSKALYNESSTLSFSGKQFSGPDGIFATLSDIRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFIIGNQFLICGDGVQVEGLPNFKDLSIDIASKRMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 669002 672214 - evm.model.ptg000007l.122 HCH9g0122 550754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0122 519 ProSiteProfiles Nuclear transport factor 2 domain profile. 367 517 IPR018222 -
HCH9g0122 519 SMART serkin_6 84 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0122 519 FunFam Mitogen-activated protein kinase kinase 3 364 518 - -
HCH9g0122 519 FunFam mitogen-activated protein kinase kinase 3 166 362 - -
HCH9g0122 519 Gene3D - 366 518 - -
HCH9g0122 519 CDD PKc_MAPKK_plant_like 85 344 - -
HCH9g0122 519 FunFam mitogen-activated protein kinase kinase 3 56 165 - -
HCH9g0122 519 Pfam Protein kinase domain 88 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0122 519 Gene3D Phosphorylase Kinase; domain 1 54 165 - -
HCH9g0122 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0122 519 ProSiteProfiles Protein kinase domain profile. 84 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0122 519 Gene3D Transferase(Phosphotransferase) domain 1 166 365 - -
HCH9g0122 519 SUPERFAMILY NTF2-like 365 517 IPR032710 -
HCH9g0122 519 SUPERFAMILY Protein kinase-like (PK-like) 86 376 IPR011009 -
HCH9g0122 519 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524(InterPro)
HCH9g0122 519 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 66 373 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0549 HCH-Chr10:4434408 HCH9g0122 HCH-Chr9:669002 4.30E-60 dispersed
HCH8g0625 HCH-Chr8:43046641 HCH9g0122 HCH-Chr9:669002 3.20E-60 dispersed
HCH9g0122 HCH-Chr9:669002 HCH6g1785 HCH-Chr6:50189761 4.00E-19 dispersed
HCH9g0122 HCH-Chr9:669002 HCH10g0504 HCH-Chr10:4106576 9.20E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81739 PF00069 Pkinase 1.00E-59 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0122 K20607 - csv:101217978 938.332