Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g0122 | ATGGCCGGTCTTGAAGAATTGAAGAAGAAGCTTACCCCATTATTTGATGCTGAAAAGGGACTTTCTTTGGATTCAACTTTAGATGTTTCTGATTCCTATACGTTTTCAGATAGTGGAACTGTTAATTTGCTAAGTAGATCATATGGGGTTTACAATATTAATGAGCTTGGGCTGCAAAAATGCACGTCTTGGCTCGAAGACAACAATTTGGGTAGTAGTGAAAGAACGTATCGATGTGGTTCTCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGGGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATTATGGCATTGAAGAAGATTAATATCTTTGAGAAGGAGAAAAGACAGCAGCTTCTTACTGAGATACGGACACTTTGTGAAGCCCCTTGTTATCAGGGTCTTGTAGAGTTTCATGGGGCATTTTATACCCCTGACTCTGGGCAAATAAGCATAGCGTTGGAGTACATGGATGGAGGGTCATTAGCAGATATCCTGCGGTTGAAAAAATGCATACCCGAGCCGGAACTTTCCTCCATGTTTCAAACGCTTCTTCATGGACTAAACTACTTACATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTGTAAATCTTAAGGGTGAGCCAAAAATTACAGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTTGTCGGAACTGTCACATATATGTCTCCTGAGCGAATCCGAAATAAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGTCTTGCACTCTTTGAGTGTGGTACTGGAGAATTTCCATATACAGCTACCGAAGGTCCTGTAAATCTTATGTTGCAGATTTTGGATGACCCATCGCCATCGCCATCAAAACAAAAGTTTTCGCCGGAGTTTTGTTCATTTATTGATGCCTGCTTGCAAAAGGATGCAGATGCTAGGCCAACAGCTGAGCAGCTGCTTTCACACCCATTTATCCGAAAATACGAGGATGAACAAGTAGATTTGTCAGCATTTGTCCAGAGTGTGTTTGATCCAATACAGAGGATGAAAGACTTGGCTGATATGTTGACCATTCATTATTACTTACTCTTTGATGGAACTGATGAAGTCTGGCATCATTCAAAAGCTTTATACAATGAAAGTTCAACTTTAAGTTTTTCTGGGAAGCAATTTTCTGGTCCAGATGGTATCTTCGCCACTCTATCTGATATTCGGAGTACATTAGCTGGGGACTGGCCTCTTGAAAAACTAGTTCATGTCGTCGAAAAACTTCAATGCCGAGCTCATGGTCGAGATGGAGTTGCTATAAGGGTGTCAGGATCCTTCATCATTGGGAATCAGTTTCTCATTTGTGGAGACGGGGTACAAGTCGAGGGATTGCCAAATTTTAAGGATCTTTCTATTGACATTGCGAGTAAAAGAATGGGATCCTTCCGAGAGCAGTTCATCATTGAACCGAGCAATCTTATCGGTCGCTACTTCATAGCCAAACAAGAGCTTTATATAATTCAGTAG | 1560 | 41.35 | MAGLEELKKKLTPLFDAEKGLSLDSTLDVSDSYTFSDSGTVNLLSRSYGVYNINELGLQKCTSWLEDNNLGSSERTYRCGSREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCYQGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRLKKCIPEPELSSMFQTLLHGLNYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNKSYSYPADIWSLGLALFECGTGEFPYTATEGPVNLMLQILDDPSPSPSKQKFSPEFCSFIDACLQKDADARPTAEQLLSHPFIRKYEDEQVDLSAFVQSVFDPIQRMKDLADMLTIHYYLLFDGTDEVWHHSKALYNESSTLSFSGKQFSGPDGIFATLSDIRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFIIGNQFLICGDGVQVEGLPNFKDLSIDIASKRMGSFREQFIIEPSNLIGRYFIAKQELYIIQ | 519 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 669002 | 672214 | - | evm.model.ptg000007l.122 | HCH9g0122 | 550754 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g0122 | 519 | ProSiteProfiles | Nuclear transport factor 2 domain profile. | 367 | 517 | IPR018222 | - | |
HCH9g0122 | 519 | SMART | serkin_6 | 84 | 340 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH9g0122 | 519 | FunFam | Mitogen-activated protein kinase kinase 3 | 364 | 518 | - | - | |
HCH9g0122 | 519 | FunFam | mitogen-activated protein kinase kinase 3 | 166 | 362 | - | - | |
HCH9g0122 | 519 | Gene3D | - | 366 | 518 | - | - | |
HCH9g0122 | 519 | CDD | PKc_MAPKK_plant_like | 85 | 344 | - | - | |
HCH9g0122 | 519 | FunFam | mitogen-activated protein kinase kinase 3 | 56 | 165 | - | - | |
HCH9g0122 | 519 | Pfam | Protein kinase domain | 88 | 340 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH9g0122 | 519 | Gene3D | Phosphorylase Kinase; domain 1 | 54 | 165 | - | - | |
HCH9g0122 | 519 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 204 | 216 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH9g0122 | 519 | ProSiteProfiles | Protein kinase domain profile. | 84 | 340 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH9g0122 | 519 | Gene3D | Transferase(Phosphotransferase) domain 1 | 166 | 365 | - | - | |
HCH9g0122 | 519 | SUPERFAMILY | NTF2-like | 365 | 517 | IPR032710 | - | |
HCH9g0122 | 519 | SUPERFAMILY | Protein kinase-like (PK-like) | 86 | 376 | IPR011009 | - | |
HCH9g0122 | 519 | ProSitePatterns | Protein kinases ATP-binding region signature. | 90 | 113 | IPR017441 | GO:0005524(InterPro) | |
HCH9g0122 | 519 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 66 | 373 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0549 | HCH-Chr10:4434408 | HCH9g0122 | HCH-Chr9:669002 | 4.30E-60 | dispersed | |
HCH8g0625 | HCH-Chr8:43046641 | HCH9g0122 | HCH-Chr9:669002 | 3.20E-60 | dispersed | |
HCH9g0122 | HCH-Chr9:669002 | HCH6g1785 | HCH-Chr6:50189761 | 4.00E-19 | dispersed | |
HCH9g0122 | HCH-Chr9:669002 | HCH10g0504 | HCH-Chr10:4106576 | 9.20E-64 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81739 | PF00069 | Pkinase | 1.00E-59 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH9g0122 | K20607 | - | csv:101217978 | 938.332 |