Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0122 ATGGCCGGTCTTGAAGAATTGAAGAAGAAGCTTACCCCATTATTTGATGCTGAAAAGGGACTTTCTTTGGATTCAACTTTAGATGTTTCTGATTCCTATACGTTTTCAGATAGTGGAACTGTTAATTTGCTAAGTAGATCATATGGGGTTTACAATATTAATGAGCTTGGGCTGCAAAAATGCACGTCTTGGCTCGAAGACAACAATTTGGGTAGTAGTGAAAGAACGTATCGATGTGGTTCTCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGGGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATTATGGCATTGAAGAAGATTAATATCTTTGAGAAGGAGAAAAGACAGCAGCTTCTTACTGAGATACGGACACTTTGTGAAGCCCCTTGTTATCAGGGTCTTGTAGAGTTTCATGGGGCATTTTATACCCCTGACTCTGGGCAAATAAGCATAGCGTTGGAGTACATGGATGGAGGGTCATTAGCAGATATCCTGCGGTTGAAAAAATGCATACCCGAGCCGGAACTTTCCTCCATGTTTCAAACGCTTCTTCATGGACTAAACTACTTACATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTGTAAATCTTAAGGGTGAGCCAAAAATTACAGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTTGTCGGAACTGTCACATATATGTCTCCTGAGCGAATCCGAAATAAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGTCTTGCACTCTTTGAGTGTGGTACTGGAGAATTTCCATATACAGCTACCGAAGGTCCTGTAAATCTTATGTTGCAGATTTTGGATGACCCATCGCCATCGCCATCAAAACAAAAGTTTTCGCCGGAGTTTTGTTCATTTATTGATGCCTGCTTGCAAAAGGATGCAGATGCTAGGCCAACAGCTGAGCAGCTGCTTTCACACCCATTTATCCGAAAATACGAGGATGAACAAGTAGATTTGTCAGCATTTGTCCAGAGTGTGTTTGATCCAATACAGAGGATGAAAGACTTGGCTGATATGTTGACCATTCATTATTACTTACTCTTTGATGGAACTGATGAAGTCTGGCATCATTCAAAAGCTTTATACAATGAAAGTTCAACTTTAAGTTTTTCTGGGAAGCAATTTTCTGGTCCAGATGGTATCTTCGCCACTCTATCTGATATTCGGAGTACATTAGCTGGGGACTGGCCTCTTGAAAAACTAGTTCATGTCGTCGAAAAACTTCAATGCCGAGCTCATGGTCGAGATGGAGTTGCTATAAGGGTGTCAGGATCCTTCATCATTGGGAATCAGTTTCTCATTTGTGGAGACGGGGTACAAGTCGAGGGATTGCCAAATTTTAAGGATCTTTCTATTGACATTGCGAGTAAAAGAATGGGATCCTTCCGAGAGCAGTTCATCATTGAACCGAGCAATCTTATCGGTCGCTACTTCATAGCCAAACAAGAGCTTTATATAATTCAGTAG 1560 41.35 MAGLEELKKKLTPLFDAEKGLSLDSTLDVSDSYTFSDSGTVNLLSRSYGVYNINELGLQKCTSWLEDNNLGSSERTYRCGSREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCYQGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRLKKCIPEPELSSMFQTLLHGLNYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNKSYSYPADIWSLGLALFECGTGEFPYTATEGPVNLMLQILDDPSPSPSKQKFSPEFCSFIDACLQKDADARPTAEQLLSHPFIRKYEDEQVDLSAFVQSVFDPIQRMKDLADMLTIHYYLLFDGTDEVWHHSKALYNESSTLSFSGKQFSGPDGIFATLSDIRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFIIGNQFLICGDGVQVEGLPNFKDLSIDIASKRMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 669002 672214 - evm.model.ptg000007l.122 HCH9g0122 550754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0122 519 ProSiteProfiles Nuclear transport factor 2 domain profile. 367 517 IPR018222 -
HCH9g0122 519 SMART serkin_6 84 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0122 519 FunFam Mitogen-activated protein kinase kinase 3 364 518 - -
HCH9g0122 519 FunFam mitogen-activated protein kinase kinase 3 166 362 - -
HCH9g0122 519 Gene3D - 366 518 - -
HCH9g0122 519 CDD PKc_MAPKK_plant_like 85 344 - -
HCH9g0122 519 FunFam mitogen-activated protein kinase kinase 3 56 165 - -
HCH9g0122 519 Pfam Protein kinase domain 88 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0122 519 Gene3D Phosphorylase Kinase; domain 1 54 165 - -
HCH9g0122 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0122 519 ProSiteProfiles Protein kinase domain profile. 84 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0122 519 Gene3D Transferase(Phosphotransferase) domain 1 166 365 - -
HCH9g0122 519 SUPERFAMILY NTF2-like 365 517 IPR032710 -
HCH9g0122 519 SUPERFAMILY Protein kinase-like (PK-like) 86 376 IPR011009 -
HCH9g0122 519 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524(InterPro)
HCH9g0122 519 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 66 373 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0122 K20607 - - csv:101217978 938.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0549 HCH-Chr10:4434408 HCH9g0122 HCH-Chr9:669002 4.30E-60 dispersed
HCH8g0625 HCH-Chr8:43046641 HCH9g0122 HCH-Chr9:669002 3.20E-60 dispersed
HCH9g0122 HCH-Chr9:669002 HCH6g1785 HCH-Chr6:50189761 4.00E-19 dispersed
HCH9g0122 HCH-Chr9:669002 HCH10g0504 HCH-Chr10:4106576 9.20E-64 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0625 . 17 352 MAP Kinase Kinase Gene Family AT4G26070 67.4 4.7e-133 471.1
HCH10g0549 . 31 357 MAP Kinase Kinase Gene Family AT4G26070 66.8 4.7e-125 444.5
HCH10g0504 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.6 6.8e-108 387.5
HCH8g0625 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 68.9 1.4e-134 476.1
HCH10g0549 . 6 331 MAP Kinase Kinase Gene Family AT4G29810 64.6 3.1e-121 431.8
HCH10g0504 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.5 3.0e-108 388.7
HCH9g0122 . 36 519 MAP Kinase Kinase Gene Family AT5G40440 79.3 1.3e-227 785.8
HCH6g0026 . 82 371 MAP Kinase Kinase Gene Family AT1G51660 74.1 1.2e-123 439.9
HCH6g0026 . 80 367 MAP Kinase Kinase Gene Family AT3G21220 72.9 2.6e-123 438.7
HCH3g0225 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 55.4 6.3e-85 311.2
HCH10g0504 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.1 8.0e-168 586.6
HCH8g0625 . 10 351 MAP Kinase Kinase Gene Family AT5G56580 59.8 4.2e-116 414.8
HCH10g0549 . 20 345 MAP Kinase Kinase Gene Family AT5G56580 59.5 7.6e-110 394.0
HCH3g0225 . 1 309 MAP Kinase Kinase Gene Family AT1G18350 61.9 5.8e-106 380.9
HCH6g0026 . 80 342 MAP Kinase Kinase Gene Family AT1G18350 52.6 1.9e-77 286.2
HCH3g0225 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 51.3 2.3e-80 295.8
HCH3g0225 . 1 312 MAP Kinase Kinase Gene Family AT1G73500 65.8 1.3e-113 406.4
HCH6g0026 . 83 339 MAP Kinase Kinase Gene Family AT1G73500 53.8 3.6e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81739 PF00069 Pkinase 1.00E-59 CL0016 HCH PK