Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g0123 | ATGGCTTCTTCCACCTATTCCAATTCTCCCTGTGCAGCCTGCAAATTCTTGAGGAGAAAATGCTTGCCAGACTGCGTCTTTGCTCCATATTTCCCACCAGAAGAACCCCAGAAGTTTGCCAATGTTCACAAAATCTTTGGTGCAAGTAATGTAAGCAAGCTGCTGAATGAAGTCCAGCCCCACCAGAGAGAAGATGCAGTTAATTCACTTGCCTATGAAGCTGAAGCTAGAATGAAAGACCCTGTCTATGGCTGTGTTGGAGCCATCTCCATCCTCCAAAGGCAAGTAATGAAGCTTCAGAAAGAACTGGACGCCACCAACGCCGACCTGATCCGCTACGCCTGCAGCGAAATCCCGCCACCGTCATCGTCGGCTCAGTTCGGGAGAAGGTCGACAAGCCACGAGGGAAGCTCGACGAGCTCCGGCTACGGCGGCCACTACTATTCTGGTATGTACTTTTCTCCATGGAATACCAACAACAATGGAGGCCCTTGTGGAGATAGTCATGAGAAAGGAGGAGAATACAAGTAA | 531 | 49.72 | MASSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVMKLQKELDATNADLIRYACSEIPPPSSSAQFGRRSTSHEGSSTSSGYGGHYYSGMYFSPWNTNNNGGPCGDSHEKGGEYK | 176 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 676969 | 677499 | + | evm.model.ptg000007l.123 | HCH9g0123 | 550755 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g0123 | 176 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 8 | 118 | - | - | |
HCH9g0123 | 176 | Coils | Coil | 89 | 109 | - | - | |
HCH9g0123 | 176 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
HCH9g0123 | 176 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - | |
HCH9g0123 | 176 | MobiDBLite | consensus disorder prediction | 121 | 141 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0561 | HCH-Chr13:3994719 | HCH9g0123 | HCH-Chr9:676969 | 5.60E-37 | dispersed | |
HCH9g0123 | HCH-Chr9:676969 | HCH9g1382 | HCH-Chr9:45403445 | 2.80E-28 | dispersed | |
HCH2g0088 | HCH-Chr2:6108360 | HCH9g0123 | HCH-Chr9:676969 | 6.90E-41 | transposed | |
HCH13g0848 | HCH-Chr13:8747991 | HCH9g0123 | HCH-Chr9:676969 | 7.20E-60 | wgd | |
HCH3g0362 | HCH-Chr3:2309309 | HCH9g0123 | HCH-Chr9:676969 | 6.30E-54 | wgd | |
HCH8g1410 | HCH-Chr8:48776485 | HCH9g0123 | HCH-Chr9:676969 | 3.80E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34113 | PF03195 | LOB | 9.00E-43 | No_clan | HCH | TF |
Pathway information
