Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0123 ATGGCTTCTTCCACCTATTCCAATTCTCCCTGTGCAGCCTGCAAATTCTTGAGGAGAAAATGCTTGCCAGACTGCGTCTTTGCTCCATATTTCCCACCAGAAGAACCCCAGAAGTTTGCCAATGTTCACAAAATCTTTGGTGCAAGTAATGTAAGCAAGCTGCTGAATGAAGTCCAGCCCCACCAGAGAGAAGATGCAGTTAATTCACTTGCCTATGAAGCTGAAGCTAGAATGAAAGACCCTGTCTATGGCTGTGTTGGAGCCATCTCCATCCTCCAAAGGCAAGTAATGAAGCTTCAGAAAGAACTGGACGCCACCAACGCCGACCTGATCCGCTACGCCTGCAGCGAAATCCCGCCACCGTCATCGTCGGCTCAGTTCGGGAGAAGGTCGACAAGCCACGAGGGAAGCTCGACGAGCTCCGGCTACGGCGGCCACTACTATTCTGGTATGTACTTTTCTCCATGGAATACCAACAACAATGGAGGCCCTTGTGGAGATAGTCATGAGAAAGGAGGAGAATACAAGTAA 531 49.72 MASSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVMKLQKELDATNADLIRYACSEIPPPSSSAQFGRRSTSHEGSSTSSGYGGHYYSGMYFSPWNTNNNGGPCGDSHEKGGEYK 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 676969 677499 + evm.model.ptg000007l.123 HCH9g0123 550755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0123 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 118 - -
HCH9g0123 176 Coils Coil 89 109 - -
HCH9g0123 176 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
HCH9g0123 176 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
HCH9g0123 176 MobiDBLite consensus disorder prediction 121 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0561 HCH-Chr13:3994719 HCH9g0123 HCH-Chr9:676969 5.60E-37 dispersed
HCH9g0123 HCH-Chr9:676969 HCH9g1382 HCH-Chr9:45403445 2.80E-28 dispersed
HCH2g0088 HCH-Chr2:6108360 HCH9g0123 HCH-Chr9:676969 6.90E-41 transposed
HCH13g0848 HCH-Chr13:8747991 HCH9g0123 HCH-Chr9:676969 7.20E-60 wgd
HCH3g0362 HCH-Chr3:2309309 HCH9g0123 HCH-Chr9:676969 6.30E-54 wgd
HCH8g1410 HCH-Chr8:48776485 HCH9g0123 HCH-Chr9:676969 3.80E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34113 PF03195 LOB 9.00E-43 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0123 - - - 0.0