Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0130 ATGGCTTCTCCATTTCAACATTTCCATAATCCAATCCATAATATTCCCTTCTTCTTCTTTTTCTTCTTCTGCTCCTTCTTCTTCTCTATATCTCTCTCTGATCCTCGAATCTCTGAAGCAGGAAGCTTCTGTGGAACTTACAAGCCTCCACCAAACACCAGCTTCATTCCCACTTTCATCAAAGAAATGGAATCCATTTCTCAGCTCTTAACAACTCAAAACTGGGCCACTCATTTTGTCAATTCCACACCACCAATGTATGGCTTATCCCAATGTTTCCAAGACCTTTCTCATACTGATTGCCTTCTTTGTTATGCCGCCAGCCGTACTACTCTTCCTCGCTGTCTCCCTGCCGTCTCCGCTCGTATTTTCCTCGACGGTTGTTTTCTTCGTTACGATAATTATAGCTTCTACCATGAAGCTATTGATCCTGTTATGGATTCTGTGAATTGCACTTCTCGATATGGAAAGATCGTCAAGGAGAATGAGAAGTCGGTGTTCGTGAAGAACGTCGAGGTTGTCGTTAGGAATGTGATTCGGGAGGCGATAACAACGAAGAGCGGATTTGGAATTGGAGGAGTGAAGGGTGGTTTATATGCATTGGCACAGTGTTGGGGGAGTGTTGAGGAAGAGGGATGTAAGATTTGTTTGGAAAAAGCAAGTAGGAGTATTAGGAGGTGTTTGCCTAATTCAGAAGGGAGGGCTTTGAATGCTGGTTGTTATTTGAGGTATTCAACTGTGAAGTTTTATAATGATCATCAAGAGGATAGGGATGGAAATGGGTTTTCTGGAAGAAGAGCTGTAGTTGCCATTGCTTTAGCTTCAGCTGCCTTCTTGATTCTCTCCTTTTCTGCTGTTTATGCATGCCATATAAAAATATCAAAGTTGAAGAAAGCGCGTGAAAATCGATCCTTGATACCAACCTCCTTTAGGAGTTCCAGTCTAAACTTTAAATATGAAGCACTTGAAAAGGCAACAGATTACTTCAATCCATCAAGTAAAATAGGTCAAGGTGGAGCTGGTTCTGTATACAAAGGGACTCTTCCAAATGGGGAGATTGTTGCTGTCAAGAGGCTGGTTTTCAATACAAGGCAATGGGTAGATGAGTTCTTCAATGAAGTGAATTTGATACGTGGAATCCAACACAAAAACTTGGTCACCCTCTTAGGTTGCAGCATTGAAGGGCCTGAAAGTTTACTGGTTTATGAATATATTCTCAATGGAAGCCTTGATCACTTCCTTTTTGCTAAGAACAAGGTTCAGATTCTAAATTGGAAGCAACGTTTTAACATCATTGTGGGAACAGCTGAGGGGCTTGGACATCTCCATGAAGGTTGTAAAATAAGAATAATCCACAGGGACATAAAGAGTAGTAATGTTCTTCTTGATGAAAATTTCACTCCAAAGATCGCGGATTTCGGCTTGGCACGATGTTTTGCCGCTGATCAGACTCATATTAGCACTGGAATTGCTGGGACACTCGGTTACATGTCTCCCGAGTATCTCGTTCGAGGACAACTTACGGAAAAAGCAGATGTTTACAGTTTTGGGGTGCTGATACTCGAAATTGTTTGTGGTAGAAGAAACAGTTCCTTCACAGAGAACTCTACTTCACTCCTCCAAATAGTTTGGGAGCTTTACAAATCAGAGAGATTGATTGAAGCAGTTGACACTTGCATGAACAATTATTACTGTTCAAAAGAAGTAAAAAATGTTCTTCAAATTGGGCTCTTATGCACACAAGCTGAAGCATCTCTAAGGCCATCCATGGCCACAGTAGTGCAGCTTCTAACAAATGAAGAAAGGGAGATTGGTATTCCAAATCAACCTCCTTTTATGAGTCACCATGATGGGTCCTCAGGAAGATCTTGCAGTATCAGCAGCTTGGTATCTCGTGCAGTCTCTAAACTTGAAGCTTCTTCTTCCACTTCAACAGATTCAGGTACCTCCTCTTGCTTGCCATCAAGAAGTGGAGATTTTGCTTAA 1986 41.59 MASPFQHFHNPIHNIPFFFFFFFCSFFFSISLSDPRISEAGSFCGTYKPPPNTSFIPTFIKEMESISQLLTTQNWATHFVNSTPPMYGLSQCFQDLSHTDCLLCYAASRTTLPRCLPAVSARIFLDGCFLRYDNYSFYHEAIDPVMDSVNCTSRYGKIVKENEKSVFVKNVEVVVRNVIREAITTKSGFGIGGVKGGLYALAQCWGSVEEEGCKICLEKASRSIRRCLPNSEGRALNAGCYLRYSTVKFYNDHQEDRDGNGFSGRRAVVAIALASAAFLILSFSAVYACHIKISKLKKARENRSLIPTSFRSSSLNFKYEALEKATDYFNPSSKIGQGGAGSVYKGTLPNGEIVAVKRLVFNTRQWVDEFFNEVNLIRGIQHKNLVTLLGCSIEGPESLLVYEYILNGSLDHFLFAKNKVQILNWKQRFNIIVGTAEGLGHLHEGCKIRIIHRDIKSSNVLLDENFTPKIADFGLARCFAADQTHISTGIAGTLGYMSPEYLVRGQLTEKADVYSFGVLILEIVCGRRNSSFTENSTSLLQIVWELYKSERLIEAVDTCMNNYYCSKEVKNVLQIGLLCTQAEASLRPSMATVVQLLTNEEREIGIPNQPPFMSHHDGSSGRSCSISSLVSRAVSKLEASSSTSTDSGTSSCLPSRSGDFA 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 723123 726142 - evm.model.ptg000007l.130 HCH9g0130 550762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0130 661 Pfam Salt stress response/antifungal 160 246 IPR002902 -
HCH9g0130 661 Pfam Salt stress response/antifungal 57 135 IPR002902 -
HCH9g0130 661 SMART serkin_6 329 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0130 661 Pfam Protein kinase domain 331 595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0130 661 ProSiteProfiles Protein kinase domain profile. 329 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0130 661 CDD STKc_IRAK 335 599 - -
HCH9g0130 661 SUPERFAMILY Protein kinase-like (PK-like) 305 597 IPR011009 -
HCH9g0130 661 Gene3D - 150 249 IPR038408 -
HCH9g0130 661 Gene3D - 41 137 IPR038408 -
HCH9g0130 661 MobiDBLite consensus disorder prediction 640 661 - -
HCH9g0130 661 Gene3D Phosphorylase Kinase; domain 1 289 404 - -
HCH9g0130 661 FunFam Cysteine-rich receptor-like protein kinase 2 405 604 - -
HCH9g0130 661 Gene3D Transferase(Phosphotransferase) domain 1 406 607 - -
HCH9g0130 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0130 661 ProSiteProfiles Gnk2-homologous domain profile. 146 249 IPR002902 -
HCH9g0130 661 FunFam Cysteine-rich receptor-like protein kinase 42 63 137 - -
HCH9g0130 661 ProSiteProfiles Gnk2-homologous domain profile. 37 137 IPR002902 -
HCH9g0130 661 FunFam Cysteine-rich receptor-like protein kinase 2 296 404 - -
HCH9g0130 661 FunFam Cysteine-rich receptor-like protein kinase 3 150 249 - -
HCH9g0130 661 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 178 631 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0039 HCH-Chr4:241828 HCH9g0130 HCH-Chr9:723123 6.90E-141 dispersed
HCH7g0221 HCH-Chr7:1485491 HCH9g0130 HCH-Chr9:723123 5.10E-75 dispersed
HCH9g0130 HCH-Chr9:723123 HCH14g0846 HCH-Chr14:36321853 6.60E-75 dispersed
HCH9g0130 HCH-Chr9:723123 HCH9g0131 HCH-Chr9:727678 4.50E-108 tandem
HCH8g1079 HCH-Chr8:46661780 HCH9g0130 HCH-Chr9:723123 3.50E-79 transposed
HCH1g1050 HCH-Chr1:58350804 HCH9g0130 HCH-Chr9:723123 2.30E-152 wgd
HCH3g0350 HCH-Chr3:2243040 HCH9g0130 HCH-Chr9:723123 1.60E-161 wgd
HCH4g0038 HCH-Chr4:237869 HCH9g0130 HCH-Chr9:723123 1.80E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81740 PF00069 Pkinase 1.70E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0130 - - - 0.0