Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0143 ATGATACGTCGTGTTGCTTCAGGTCTTCCTTGTTTAAACACTAATCAAAGGAAATTGATTGCGGCTAATGCACCACGGAAGAGATATCCTGTAAACTCGAAATATTATAAGTTATACGAAGTAGTTGGTGAGGGTGTCAGTGCAACTGTGTATAGGGCTCTTTGTGTTCCGTTAAATGAGATTGTCGCCATTAAGGTTCTTGATTTAGAGAGGTGCAATAATGACCTGGATGTCATTCACCAAGAGGTCAAAGCGATGACCTTGATTGATCATACCAATGTTTTGCAAGCCCATTGTTCTTTCACAACTGACCACTACCTTTGGATTGTGATGCCATACATGGCTGGAGGATCATGCCTTGATATAATGAAATTGGCCCATCCAGAAGGTTTTGAAGAGCCGATTATAGCTTTTTTGTTGCATGAAGTTCTTAAAGCTCTTGTTTATCTTCACTCCCATGGTCACATCCATAGAGATGTGAAGGCTGGCAATATTTTGGTTCATTCAAATGGTGCAGTCAAGCTAGCTGATCTTGGAGTGTCAGCTTCCACATTTGATACTGGAGATAGGCAACGTTCAAGAAACGCTTTTGTGGGCACCCCTTGCTGGATGGCTCCCGAAGTTATGCAGCAATTGCATGGATATGACTTCAAGGCAGATATCTGGTCATTTGGAATAACTGCTCTTGAACTTGCTCATGGCCATGCCCCATTTTCCAAGTATCCACCTATGAAAGTTTTGCTGATGACCTTACAAAATGCACCTCCTGGTCTTCATTATGAACGAGACAAGAGATTCTCAAAGTCATTTAAAGAGATGGTAGCTGCATGCTTAGTGAAGGATCCAAAAAAACGCCCCAAAGCAAAGAAGCTTCTAAAACATCCATTTTTCAAACAAGGACACCCAAATGAATATCTTGTTCGCACTATTCTTGATAGCCTTCCTCCTCTTGAAAATCACTTTGAAATGTTGAAGGCAAAAGAAGCTGAACTTCTTGGGCAGAATAAGAGTCTATATGATGATAAAGAGCAAGAATCACAGAAAGGGTATATTCAAGGAGTGAGTGCCTGGAACTTCAATCTCGATGATTTGAAAAGTCAGGCTGCTCTTATTCAGGATGCCGTGGGAGTAAATGACAGACAAAACGATGAAAAAGATTTTGGTTCTCATGCAGAGAGGACATCAATGGAAAAACTGTGTTGTTTAAACATGACACCTAGTTCTGAGGATGTGTGTCATGATCATCATGATTTAGAGAGTTCAGTTGCTCCAATTCTTCTTAAGCATAATGGAGCGGTAAATAATAGTTATAAGCTGTGCGAGGAAGATATGAACATAGCTAATCTAAGAGAGCATATGAACATAGCTAATGGAAGAGAAGATGTAAACACAGCGAATGGAAGAGAAGATATAAACACAGGGAATGGAAGAGAAGATATAAACACAATTAATCCAAGAGTGGTGGATCAAGAATATAGAATTGATGTAGATTGTACATCCAGTGAACCTGCTGCTCAGTTAAAGGGACGCTTTAAAGTTACATCAGCTGGTCTGGGTCAAAAGGATCCTACTATCAGCTTGTTTCATCCAGTTGCTGGAACGACAAATCTTTCGTCACTTCTCCCATCGCTGCACTGCATTTTGCAGCAGAACGACTTGCAGAGGGAAGAAATTATAAACTCAATCAAGCAACTGGAACAAATTTCTGGCAAGTACAGAGAGTCGGCCGAGGTACTTCCAGCATCCTCGAGGGAGAGAGAATTAAGGTCTTTGCTGATTCATCTGCATCATAGGGTCAGCAATCTAACTGAGGAACTATACAGCCAAAGACAAAAAAATGCCCAGTTAGAAAAAAAATTGAATGCTTCAGTATTCAAAGAGGAAATATTATGA 1893 40.41 MIRRVASGLPCLNTNQRKLIAANAPRKRYPVNSKYYKLYEVVGEGVSATVYRALCVPLNEIVAIKVLDLERCNNDLDVIHQEVKAMTLIDHTNVLQAHCSFTTDHYLWIVMPYMAGGSCLDIMKLAHPEGFEEPIIAFLLHEVLKALVYLHSHGHIHRDVKAGNILVHSNGAVKLADLGVSASTFDTGDRQRSRNAFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLHYERDKRFSKSFKEMVAACLVKDPKKRPKAKKLLKHPFFKQGHPNEYLVRTILDSLPPLENHFEMLKAKEAELLGQNKSLYDDKEQESQKGYIQGVSAWNFNLDDLKSQAALIQDAVGVNDRQNDEKDFGSHAERTSMEKLCCLNMTPSSEDVCHDHHDLESSVAPILLKHNGAVNNSYKLCEEDMNIANLREHMNIANGREDVNTANGREDINTGNGREDINTINPRVVDQEYRIDVDCTSSEPAAQLKGRFKVTSAGLGQKDPTISLFHPVAGTTNLSSLLPSLHCILQQNDLQREEIINSIKQLEQISGKYRESAEVLPASSRERELRSLLIHLHHRVSNLTEELYSQRQKNAQLEKKLNASVFKEEIL 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 820812 828596 - evm.model.ptg000007l.143 HCH9g0143 550775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0143 630 FunFam serine/threonine-protein kinase BLUS1 isoform X1 117 350 - -
HCH9g0143 630 Gene3D Transferase(Phosphotransferase) domain 1 117 348 - -
HCH9g0143 630 Pfam Protein kinase domain 36 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0143 630 CDD STKc_OSR1_SPAK 36 297 - -
HCH9g0143 630 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 27 616 IPR047173 GO:0043539(InterPro)
HCH9g0143 630 Coils Coil 599 619 - -
HCH9g0143 630 SUPERFAMILY Protein kinase-like (PK-like) 35 339 IPR011009 -
HCH9g0143 630 FunFam Serine/threonine-protein kinase BLUS1 25 113 - -
HCH9g0143 630 Gene3D Phosphorylase Kinase; domain 1 25 112 - -
HCH9g0143 630 ProSiteProfiles Protein kinase domain profile. 36 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0143 630 SMART serkin_6 36 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0143 630 ProSitePatterns Protein kinases ATP-binding region signature. 42 65 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0302 HCH-Chr6:4435157 HCH9g0143 HCH-Chr9:820812 3.80E-137 dispersed
HCH6g1181 HCH-Chr6:46251093 HCH9g0143 HCH-Chr9:820812 2.90E-124 dispersed
HCH7g1302 HCH-Chr7:45928670 HCH9g0143 HCH-Chr9:820812 5.10E-85 dispersed
HCH9g0143 HCH-Chr9:820812 HCH3g0225 HCH-Chr3:1436069 3.30E-23 dispersed
HCH13g0822 HCH-Chr13:8095930 HCH9g0143 HCH-Chr9:820812 4.70E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81743 PF00069 Pkinase 2.00E-57 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0143 K08835 - mdm:103404327 677.937