Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0143 ATGATACGTCGTGTTGCTTCAGGTCTTCCTTGTTTAAACACTAATCAAAGGAAATTGATTGCGGCTAATGCACCACGGAAGAGATATCCTGTAAACTCGAAATATTATAAGTTATACGAAGTAGTTGGTGAGGGTGTCAGTGCAACTGTGTATAGGGCTCTTTGTGTTCCGTTAAATGAGATTGTCGCCATTAAGGTTCTTGATTTAGAGAGGTGCAATAATGACCTGGATGTCATTCACCAAGAGGTCAAAGCGATGACCTTGATTGATCATACCAATGTTTTGCAAGCCCATTGTTCTTTCACAACTGACCACTACCTTTGGATTGTGATGCCATACATGGCTGGAGGATCATGCCTTGATATAATGAAATTGGCCCATCCAGAAGGTTTTGAAGAGCCGATTATAGCTTTTTTGTTGCATGAAGTTCTTAAAGCTCTTGTTTATCTTCACTCCCATGGTCACATCCATAGAGATGTGAAGGCTGGCAATATTTTGGTTCATTCAAATGGTGCAGTCAAGCTAGCTGATCTTGGAGTGTCAGCTTCCACATTTGATACTGGAGATAGGCAACGTTCAAGAAACGCTTTTGTGGGCACCCCTTGCTGGATGGCTCCCGAAGTTATGCAGCAATTGCATGGATATGACTTCAAGGCAGATATCTGGTCATTTGGAATAACTGCTCTTGAACTTGCTCATGGCCATGCCCCATTTTCCAAGTATCCACCTATGAAAGTTTTGCTGATGACCTTACAAAATGCACCTCCTGGTCTTCATTATGAACGAGACAAGAGATTCTCAAAGTCATTTAAAGAGATGGTAGCTGCATGCTTAGTGAAGGATCCAAAAAAACGCCCCAAAGCAAAGAAGCTTCTAAAACATCCATTTTTCAAACAAGGACACCCAAATGAATATCTTGTTCGCACTATTCTTGATAGCCTTCCTCCTCTTGAAAATCACTTTGAAATGTTGAAGGCAAAAGAAGCTGAACTTCTTGGGCAGAATAAGAGTCTATATGATGATAAAGAGCAAGAATCACAGAAAGGGTATATTCAAGGAGTGAGTGCCTGGAACTTCAATCTCGATGATTTGAAAAGTCAGGCTGCTCTTATTCAGGATGCCGTGGGAGTAAATGACAGACAAAACGATGAAAAAGATTTTGGTTCTCATGCAGAGAGGACATCAATGGAAAAACTGTGTTGTTTAAACATGACACCTAGTTCTGAGGATGTGTGTCATGATCATCATGATTTAGAGAGTTCAGTTGCTCCAATTCTTCTTAAGCATAATGGAGCGGTAAATAATAGTTATAAGCTGTGCGAGGAAGATATGAACATAGCTAATCTAAGAGAGCATATGAACATAGCTAATGGAAGAGAAGATGTAAACACAGCGAATGGAAGAGAAGATATAAACACAGGGAATGGAAGAGAAGATATAAACACAATTAATCCAAGAGTGGTGGATCAAGAATATAGAATTGATGTAGATTGTACATCCAGTGAACCTGCTGCTCAGTTAAAGGGACGCTTTAAAGTTACATCAGCTGGTCTGGGTCAAAAGGATCCTACTATCAGCTTGTTTCATCCAGTTGCTGGAACGACAAATCTTTCGTCACTTCTCCCATCGCTGCACTGCATTTTGCAGCAGAACGACTTGCAGAGGGAAGAAATTATAAACTCAATCAAGCAACTGGAACAAATTTCTGGCAAGTACAGAGAGTCGGCCGAGGTACTTCCAGCATCCTCGAGGGAGAGAGAATTAAGGTCTTTGCTGATTCATCTGCATCATAGGGTCAGCAATCTAACTGAGGAACTATACAGCCAAAGACAAAAAAATGCCCAGTTAGAAAAAAAATTGAATGCTTCAGTATTCAAAGAGGAAATATTATGA 1893 40.41 MIRRVASGLPCLNTNQRKLIAANAPRKRYPVNSKYYKLYEVVGEGVSATVYRALCVPLNEIVAIKVLDLERCNNDLDVIHQEVKAMTLIDHTNVLQAHCSFTTDHYLWIVMPYMAGGSCLDIMKLAHPEGFEEPIIAFLLHEVLKALVYLHSHGHIHRDVKAGNILVHSNGAVKLADLGVSASTFDTGDRQRSRNAFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLHYERDKRFSKSFKEMVAACLVKDPKKRPKAKKLLKHPFFKQGHPNEYLVRTILDSLPPLENHFEMLKAKEAELLGQNKSLYDDKEQESQKGYIQGVSAWNFNLDDLKSQAALIQDAVGVNDRQNDEKDFGSHAERTSMEKLCCLNMTPSSEDVCHDHHDLESSVAPILLKHNGAVNNSYKLCEEDMNIANLREHMNIANGREDVNTANGREDINTGNGREDINTINPRVVDQEYRIDVDCTSSEPAAQLKGRFKVTSAGLGQKDPTISLFHPVAGTTNLSSLLPSLHCILQQNDLQREEIINSIKQLEQISGKYRESAEVLPASSRERELRSLLIHLHHRVSNLTEELYSQRQKNAQLEKKLNASVFKEEIL 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 820812 828596 - evm.model.ptg000007l.143 HCH9g0143 550775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0143 630 FunFam serine/threonine-protein kinase BLUS1 isoform X1 117 350 - -
HCH9g0143 630 Gene3D Transferase(Phosphotransferase) domain 1 117 348 - -
HCH9g0143 630 Pfam Protein kinase domain 36 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0143 630 CDD STKc_OSR1_SPAK 36 297 - -
HCH9g0143 630 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 27 616 IPR047173 GO:0043539(InterPro)
HCH9g0143 630 Coils Coil 599 619 - -
HCH9g0143 630 SUPERFAMILY Protein kinase-like (PK-like) 35 339 IPR011009 -
HCH9g0143 630 FunFam Serine/threonine-protein kinase BLUS1 25 113 - -
HCH9g0143 630 Gene3D Phosphorylase Kinase; domain 1 25 112 - -
HCH9g0143 630 ProSiteProfiles Protein kinase domain profile. 36 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0143 630 SMART serkin_6 36 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0143 630 ProSitePatterns Protein kinases ATP-binding region signature. 42 65 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0143 K08835 - - mdm:103404327 677.937
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0302 HCH-Chr6:4435157 HCH9g0143 HCH-Chr9:820812 3.80E-137 dispersed
HCH6g1181 HCH-Chr6:46251093 HCH9g0143 HCH-Chr9:820812 2.90E-124 dispersed
HCH7g1302 HCH-Chr7:45928670 HCH9g0143 HCH-Chr9:820812 5.10E-85 dispersed
HCH9g0143 HCH-Chr9:820812 HCH3g0225 HCH-Chr3:1436069 3.30E-23 dispersed
HCH13g0822 HCH-Chr13:8095930 HCH9g0143 HCH-Chr9:820812 4.70E-193 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g1055 . 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 62.5 1.4e-224 776.2
HCH1g0869 . 264 529 MAP Kinase Kinase Kinase Kinase AT1G53165 51.3 1.1e-67 255.0
HCH2g1479 . 50 315 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 3.4e-66 250.0
HCH10g0768 . 39 185 MAP Kinase Kinase Kinase Kinase AT1G53165 56.1 1.6e-39 161.4
HCH12g1055 . 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 65.0 3.3e-234 808.1
HCH1g0869 . 264 529 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 3.7e-68 256.5
HCH2g1479 . 50 315 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 1.2e-66 251.5
HCH10g0768 . 39 185 MAP Kinase Kinase Kinase Kinase AT3G15220 56.1 7.2e-40 162.5
HCH1g0869 . 4 852 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 2.6e-230 795.4
HCH2g1479 . 1 512 MAP Kinase Kinase Kinase Kinase AT1G69220 59.2 7.9e-155 544.7
HCH12g1055 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 5.1e-69 259.6
HCH2g1476 . 28 161 MAP Kinase Kinase Kinase Kinase AT1G69220 76.6 1.0e-53 208.8
HCH13g0822 . 1 669 MAP Kinase Kinase Kinase Kinase AT5G14720 64.6 1.9e-250 862.1
HCH9g0143 . 27 628 MAP Kinase Kinase Kinase Kinase AT5G14720 54.4 7.5e-183 637.5
HCH6g1181 . 8 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.6 5.8e-250 860.5
HCH6g1181 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 65.6 4.7e-249 857.4
HCH9g0143 . 22 371 MAP Kinase Kinase Kinase Kinase AT1G70430 65.4 4.5e-131 465.3
HCH6g0302 . 13 371 MAP Kinase Kinase Kinase Kinase AT1G70430 60.7 1.8e-127 453.4
HCH6g1181 . 5 386 MAP Kinase Kinase Kinase Kinase AT1G70430 55.8 3.6e-120 429.1
HCH6g0302 . 11 680 MAP Kinase Kinase Kinase Kinase AT1G79640 57.0 2.3e-205 712.2
HCH9g0143 . 26 373 MAP Kinase Kinase Kinase Kinase AT1G79640 67.5 4.4e-143 505.4
HCH13g0822 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.3 4.6e-102 368.6
HCH9g0143 . 23 347 MAP Kinase Kinase Kinase Kinase AT1G23700 54.6 9.7e-92 334.3
HCH6g0302 . 15 333 MAP Kinase Kinase Kinase Kinase AT1G23700 52.8 3.6e-86 315.8
HCH6g1181 . 17 311 MAP Kinase Kinase Kinase Kinase AT1G23700 50.7 2.2e-75 280.0
HCH7g1302 . 15 453 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 5.1e-141 498.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017912 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 2 1 0 6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81743 PF00069 Pkinase 2.00E-57 CL0016 HCH PK