Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0145 ATGGCAGTTCTTCAACTTCCTTATATCAGAACTATTCGCTCGAAATCGCTATTTTTGAGTGGCAGAAACTCCTGTTTATTTCGAGGAAAGGATTTGTGTTTTGGAAACGAAGGTATAAAGGATGGTACCAAACTGAAATCTCGAGTCAATGGCGGTGTTGTTAAGGTTATTGCGATGACTAACGGCGATTCTTCTTCTTCTTCTTCGCTTAAGATGAATCTCAATGAGTACATGGTTACTCTCGAGAAACCGCTCGGCATTCGGTTTGCGATTTCTGTCGATGGAAGAATCTTTGTTCACGCGCTCAAGAAAGGGGGTAATGCTGAAAAATCAAGAATAATCATGGTGGGGGATACTTTAAAGAAAGCAAGCGATTCATCAGGCAGAAATCTTGTTGAGATCAAAGACTATGGTGATTTGCTGAACATGCTGAAGGAGACCGCGGGGACTTTTAGCCTCGTTCTTGAAAGACCTTTCTCTCCTTTTCCAGTTCATCAACTTCTGCTTGTAAACGATCTAGATATTTTGTATAACAGAGGTCGAGTACCGATTGCAACCTGGAAAAAAGAAGTCATGGCATCAAATTTACAAACATCTGATGAAAACAGTGGGAATTCCGGCTTTGTGACGTTCTCCTCTAAGTTTTCATCACCAAATGGTTGGAAATATTTCAATGAACAAAATAAAAATGTAGAATCACGAATGCAGAAAAACAACCTCACCCATCAAATCAGCCAAGTTGTCAGTATCTTTACTGAAGAGGAGCCTGGAGATGGTGAATGGGCTCATGGGAGCTTCCCACTTGATGAATATGTCAGGGCACTAGAACGGTCTAAAGGGGAGCTATATTACGACTACTCTCGTGGTATGAGCTATAGTAAGATCACAGAGCAAATTTATGTGGGATCATGCATACAGACTGAAGTAGACGTGGAGATTTTGTCTAACTTGGGAATCACTGCTATACTGAATTTTCAAAGTGTCATTGAAGCAGAAAACTGGGGGATTGACTCCAAGTTAGTCAATGAGTCATGCCAAAAATTTGATATTCTCATGATCAACTATCCTATCAGGGAGGGAGATTCATATGATTTGAGGAAAAAACTCCCATTTTCTGTGGGGCTACTACTGCGATTGTTAAGAAAGAACCACCGAGTTTTTGTTACATGTACCACTGGTTTCGATCGATCTCCAGCAAGTTTGATTGCATACCTACATTGGATGGCCGATACTTCTCTTCATGCAGCATATAATTATATTACTAGTTTGCATTCCTGCCAACCAGACAGACCAGCAATCGCTTGGGCTACATGGGATCTCATAGCAATGGTGGAAAATGGACAGCATGATGGGCCCGCCACTCATGTTGTGACCTTTATATGGATGGGACACGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAATTGGAAGGAACCTGTGAAGGCCAATTCCAAGGGTGGAACTAGATATGAAGTAGAAATGAGACTACCTCAGGGGAAGTACTACTACAAGTATATCACAAATGGTCAATGGATGCATTCAACAGCTTCACCTGCTGAAAGGGATATGTCGGGGAATCTCAACAATGTGATAGAAATTGGCGACATTGCCAGTGTGAGGCCTTTAGTTAAATCGCATAAAAAAGATGCAAATATTGTGAAGGTAATTGAAAGACCATTGACAGAAAAGGAGCGGTTTTTGCTGGCGAAAGCGGCTCGTTGTGTTGCATTTTATGTCTGCCCCATTAGATTAGCTCCCAAGTGA 1773 41.57 MAVLQLPYIRTIRSKSLFLSGRNSCLFRGKDLCFGNEGIKDGTKLKSRVNGGVVKVIAMTNGDSSSSSSLKMNLNEYMVTLEKPLGIRFAISVDGRIFVHALKKGGNAEKSRIIMVGDTLKKASDSSGRNLVEIKDYGDLLNMLKETAGTFSLVLERPFSPFPVHQLLLVNDLDILYNRGRVPIATWKKEVMASNLQTSDENSGNSGFVTFSSKFSSPNGWKYFNEQNKNVESRMQKNNLTHQISQVVSIFTEEEPGDGEWAHGSFPLDEYVRALERSKGELYYDYSRGMSYSKITEQIYVGSCIQTEVDVEILSNLGITAILNFQSVIEAENWGIDSKLVNESCQKFDILMINYPIREGDSYDLRKKLPFSVGLLLRLLRKNHRVFVTCTTGFDRSPASLIAYLHWMADTSLHAAYNYITSLHSCQPDRPAIAWATWDLIAMVENGQHDGPATHVVTFIWMGHEGEDVNLVGDFTGNWKEPVKANSKGGTRYEVEMRLPQGKYYYKYITNGQWMHSTASPAERDMSGNLNNVIEIGDIASVRPLVKSHKKDANIVKVIERPLTEKERFLLAKAARCVAFYVCPIRLAPK 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 843274 847433 + evm.model.ptg000007l.145 HCH9g0145 550777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0145 590 Pfam Glycogen recognition site of AMP-activated protein kinase 457 537 IPR032640 -
HCH9g0145 590 CDD E_set_AMPKbeta_like_N 457 536 - -
HCH9g0145 590 ProSiteProfiles PDZ domain profile. 78 159 IPR001478 GO:0005515(InterPro)
HCH9g0145 590 Gene3D Immunoglobulins 444 540 IPR013783 -
HCH9g0145 590 SUPERFAMILY E set domains 455 537 IPR014756 -
HCH9g0145 590 ProSiteProfiles Dual specificity protein phosphatase domain profile. 291 446 IPR020422 GO:0006470(InterPro)
HCH9g0145 590 Pfam Dual specificity phosphatase, catalytic domain 299 422 IPR000340 GO:0016311(InterPro)
HCH9g0145 590 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 282 428 IPR029021 -
HCH9g0145 590 SMART dsp_5 291 441 IPR020422 GO:0006470(InterPro)
HCH9g0145 590 CDD DSP_laforin-like 290 435 IPR045204 GO:0019203(InterPro)
HCH9g0145 590 Gene3D Protein tyrosine phosphatase superfamily 284 542 IPR029021 -
HCH9g0145 590 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 62 584 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
HCH9g0145 590 SUPERFAMILY PDZ domain-like 60 159 IPR036034 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0144 HCH-Chr9:834601 HCH9g0145 HCH-Chr9:843274 3.80E-08 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0145 - - - 0.0