Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0145 ATGGCAGTTCTTCAACTTCCTTATATCAGAACTATTCGCTCGAAATCGCTATTTTTGAGTGGCAGAAACTCCTGTTTATTTCGAGGAAAGGATTTGTGTTTTGGAAACGAAGGTATAAAGGATGGTACCAAACTGAAATCTCGAGTCAATGGCGGTGTTGTTAAGGTTATTGCGATGACTAACGGCGATTCTTCTTCTTCTTCTTCGCTTAAGATGAATCTCAATGAGTACATGGTTACTCTCGAGAAACCGCTCGGCATTCGGTTTGCGATTTCTGTCGATGGAAGAATCTTTGTTCACGCGCTCAAGAAAGGGGGTAATGCTGAAAAATCAAGAATAATCATGGTGGGGGATACTTTAAAGAAAGCAAGCGATTCATCAGGCAGAAATCTTGTTGAGATCAAAGACTATGGTGATTTGCTGAACATGCTGAAGGAGACCGCGGGGACTTTTAGCCTCGTTCTTGAAAGACCTTTCTCTCCTTTTCCAGTTCATCAACTTCTGCTTGTAAACGATCTAGATATTTTGTATAACAGAGGTCGAGTACCGATTGCAACCTGGAAAAAAGAAGTCATGGCATCAAATTTACAAACATCTGATGAAAACAGTGGGAATTCCGGCTTTGTGACGTTCTCCTCTAAGTTTTCATCACCAAATGGTTGGAAATATTTCAATGAACAAAATAAAAATGTAGAATCACGAATGCAGAAAAACAACCTCACCCATCAAATCAGCCAAGTTGTCAGTATCTTTACTGAAGAGGAGCCTGGAGATGGTGAATGGGCTCATGGGAGCTTCCCACTTGATGAATATGTCAGGGCACTAGAACGGTCTAAAGGGGAGCTATATTACGACTACTCTCGTGGTATGAGCTATAGTAAGATCACAGAGCAAATTTATGTGGGATCATGCATACAGACTGAAGTAGACGTGGAGATTTTGTCTAACTTGGGAATCACTGCTATACTGAATTTTCAAAGTGTCATTGAAGCAGAAAACTGGGGGATTGACTCCAAGTTAGTCAATGAGTCATGCCAAAAATTTGATATTCTCATGATCAACTATCCTATCAGGGAGGGAGATTCATATGATTTGAGGAAAAAACTCCCATTTTCTGTGGGGCTACTACTGCGATTGTTAAGAAAGAACCACCGAGTTTTTGTTACATGTACCACTGGTTTCGATCGATCTCCAGCAAGTTTGATTGCATACCTACATTGGATGGCCGATACTTCTCTTCATGCAGCATATAATTATATTACTAGTTTGCATTCCTGCCAACCAGACAGACCAGCAATCGCTTGGGCTACATGGGATCTCATAGCAATGGTGGAAAATGGACAGCATGATGGGCCCGCCACTCATGTTGTGACCTTTATATGGATGGGACACGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAATTGGAAGGAACCTGTGAAGGCCAATTCCAAGGGTGGAACTAGATATGAAGTAGAAATGAGACTACCTCAGGGGAAGTACTACTACAAGTATATCACAAATGGTCAATGGATGCATTCAACAGCTTCACCTGCTGAAAGGGATATGTCGGGGAATCTCAACAATGTGATAGAAATTGGCGACATTGCCAGTGTGAGGCCTTTAGTTAAATCGCATAAAAAAGATGCAAATATTGTGAAGGTAATTGAAAGACCATTGACAGAAAAGGAGCGGTTTTTGCTGGCGAAAGCGGCTCGTTGTGTTGCATTTTATGTCTGCCCCATTAGATTAGCTCCCAAGTGA 1773 41.57 MAVLQLPYIRTIRSKSLFLSGRNSCLFRGKDLCFGNEGIKDGTKLKSRVNGGVVKVIAMTNGDSSSSSSLKMNLNEYMVTLEKPLGIRFAISVDGRIFVHALKKGGNAEKSRIIMVGDTLKKASDSSGRNLVEIKDYGDLLNMLKETAGTFSLVLERPFSPFPVHQLLLVNDLDILYNRGRVPIATWKKEVMASNLQTSDENSGNSGFVTFSSKFSSPNGWKYFNEQNKNVESRMQKNNLTHQISQVVSIFTEEEPGDGEWAHGSFPLDEYVRALERSKGELYYDYSRGMSYSKITEQIYVGSCIQTEVDVEILSNLGITAILNFQSVIEAENWGIDSKLVNESCQKFDILMINYPIREGDSYDLRKKLPFSVGLLLRLLRKNHRVFVTCTTGFDRSPASLIAYLHWMADTSLHAAYNYITSLHSCQPDRPAIAWATWDLIAMVENGQHDGPATHVVTFIWMGHEGEDVNLVGDFTGNWKEPVKANSKGGTRYEVEMRLPQGKYYYKYITNGQWMHSTASPAERDMSGNLNNVIEIGDIASVRPLVKSHKKDANIVKVIERPLTEKERFLLAKAARCVAFYVCPIRLAPK 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 843274 847433 + evm.model.ptg000007l.145 HCH9g0145 550777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0145 590 Pfam Glycogen recognition site of AMP-activated protein kinase 457 537 IPR032640 -
HCH9g0145 590 CDD E_set_AMPKbeta_like_N 457 536 - -
HCH9g0145 590 ProSiteProfiles PDZ domain profile. 78 159 IPR001478 GO:0005515(InterPro)
HCH9g0145 590 Gene3D Immunoglobulins 444 540 IPR013783 -
HCH9g0145 590 SUPERFAMILY E set domains 455 537 IPR014756 -
HCH9g0145 590 ProSiteProfiles Dual specificity protein phosphatase domain profile. 291 446 IPR020422 GO:0006470(InterPro)
HCH9g0145 590 Pfam Dual specificity phosphatase, catalytic domain 299 422 IPR000340 GO:0016311(InterPro)
HCH9g0145 590 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 282 428 IPR029021 -
HCH9g0145 590 SMART dsp_5 291 441 IPR020422 GO:0006470(InterPro)
HCH9g0145 590 CDD DSP_laforin-like 290 435 IPR045204 GO:0019203(InterPro)
HCH9g0145 590 Gene3D Protein tyrosine phosphatase superfamily 284 542 IPR029021 -
HCH9g0145 590 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 62 584 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
HCH9g0145 590 SUPERFAMILY PDZ domain-like 60 159 IPR036034 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0145 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0144 HCH-Chr9:834601 HCH9g0145 HCH-Chr9:843274 3.80E-08 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH12g1470 . 4 325 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.5e-123 439.5
HCH8g1518 . 36 928 Protein tyrosine phosphatase (PTP) family AT5G23720 63.3 2.7e-308 1054.7
HCH6g1620 . 25 172 Protein tyrosine phosphatase (PTP) family AT3G06110 56.8 2.6e-44 175.3
HCH7g0076 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 75.7 3.9e-70 261.2
HCH1g0714 . 101 378 Protein tyrosine phosphatase (PTP) family AT3G52180 71.6 2.8e-115 411.8
HCH1g0316 . 7 281 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 3.7e-115 411.4
HCH9g0145 . 143 590 Protein tyrosine phosphatase (PTP) family AT3G01510 68.3 3.8e-191 664.5
HCH2g0875 . 64 225 Protein tyrosine phosphatase (PTP) family AT2G32960 66.3 1.7e-71 266.2
HCH7g0082 . 43 226 Protein tyrosine phosphatase (PTP) family AT2G32960 67.0 2.8e-69 258.8
HCH6g1038 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 1.1e-97 353.6
HCH10g0513 . 18 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.0 5.0e-79 291.6
HCH10g0513 . 28 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.1e-46 180.3
HCH2g0875 . 62 225 Protein tyrosine phosphatase (PTP) family AT4G03960 76.8 1.7e-74 275.8
HCH7g0082 . 38 226 Protein tyrosine phosphatase (PTP) family AT4G03960 63.0 3.8e-66 248.1
HCH8g0272 . 12 167 Protein tyrosine phosphatase (PTP) family AT4G03960 59.1 1.4e-52 203.0
HCH8g0272 . 1 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 8.9e-79 290.0
HCH2g0875 . 61 209 Protein tyrosine phosphatase (PTP) family AT3G02800 64.4 2.3e-55 212.2
HCH7g0082 . 32 223 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 9.2e-52 200.3
HCH1g0486 . 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.1 8.1e-64 242.3
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH7g0674 . 8 589 Protein tyrosine phosphatase (PTP) family AT3G19420 67.6 9.4e-225 776.5
HCH14g0309 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.2e-199 691.0
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH2g1250 . 60 240 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 5.1e-71 264.6
HCH6g1102 . 12 322 Protein tyrosine phosphatase (PTP) family AT2G35320 62.4 1.5e-114 409.5
HCH9g0750 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.8 1.1e-279 959.1
HCH9g0750 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.9 4.5e-257 884.0
HCH9g0750 . 78 673 Protein tyrosine phosphatase (PTP) family AT5G28210 55.2 1.3e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008517 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35