Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0154 ATGGAGTCGGGTCGGTTTTTATTCAACCCGCCTGCTTGCCATGGAAACATGCTTTACCTTGGCAAAAGCGATCCCGATTTGCGAGGAGCAAAAACAATGATGAGCATGAGCATGCAAGAAGGCCTAAATGGGCAACCATTCTTCAGGTCACCTCATGATCTGTTCGATGAGGACTATTATGACGAGATGTATCCCGAGAAGAAGCGTCGCCTCACTCACAACCAGGTGGAAATGCTGGAAAAGAGCTTCGAGGAAGAGAACAAACTAGAGCCAGAGAGAAAGACCCAGCTGGCAAAGAAGCTGGGGCTGCAGCCAAGGCAAGTGGCTGTGTGGTTCCAAAACCGCAGGGCTCGATGGAAGACAAAGCAGCTTGAAAGAGATTACGATCTGCTTAAAGCTTCATATGATTCACTTCTCTCTAATTACGACTCTATTATCAAAGAGAACACGATGCTCAAATCTGAGGTGGCTTCCTTAACTGAAAAATATCAAGCTAAAGACCTGGATAGAGGAGCACCAATTCCTAGTCTAACATCTGAGCCTCTTTTAGTCGACATTGTCGATGTCTGCATGAAGGTCGAAGACCATCTCAGTTCTGGTACTGGGAGTTATGATAGTGCAGTAGTGGACGAGGATTGTCCTCAACTCATAGACAGCGGCAATTCTTACTTCCTAAACAATGAGTATCCACTCCGTGTGCCAACAACTATCGAGACACAATTTGAGTCTGAGAATGGCAATGGCAATAACTTTTTCTCAGATGTGTTTGCGGTGTCAGATCGACTGCAACACGAGGGGGAGCCGCCAGCTTGGTGGTCAGGGCCTTGGGAGCGCGACTCAACTTATTATAGCGTGGGACTAATATGA 867 46.94 MESGRFLFNPPACHGNMLYLGKSDPDLRGAKTMMSMSMQEGLNGQPFFRSPHDLFDEDYYDEMYPEKKRRLTHNQVEMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKASYDSLLSNYDSIIKENTMLKSEVASLTEKYQAKDLDRGAPIPSLTSEPLLVDIVDVCMKVEDHLSSGTGSYDSAVVDEDCPQLIDSGNSYFLNNEYPLRVPTTIETQFESENGNGNNFFSDVFAVSDRLQHEGEPPAWWSGPWERDSTYYSVGLI 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 901841 904687 + evm.model.ptg000007l.154 HCH9g0154 550786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0154 288 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677(InterPro)
HCH9g0154 288 Gene3D - 61 128 - -
HCH9g0154 288 SUPERFAMILY Homeodomain-like 61 124 IPR009057 -
HCH9g0154 288 Pfam Homeodomain 67 120 IPR001356 GO:0003677(InterPro)
HCH9g0154 288 PRINTS Lambda-repressor HTH signature 102 118 IPR000047 GO:0003677(InterPro)
HCH9g0154 288 PRINTS Lambda-repressor HTH signature 93 102 IPR000047 GO:0003677(InterPro)
HCH9g0154 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 180 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
HCH9g0154 288 CDD homeodomain 67 123 IPR001356 GO:0003677(InterPro)
HCH9g0154 288 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH9g0154 288 FunFam Homeobox-leucine zipper protein HAT5 60 124 - -
HCH9g0154 288 SMART HOX_1 65 126 IPR001356 GO:0003677(InterPro)
HCH9g0154 288 Pfam Homeobox associated leucine zipper 122 163 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0958 HCH-Chr1:57800127 HCH9g0154 HCH-Chr9:901841 2.60E-19 dispersed
HCH3g0280 HCH-Chr3:1777841 HCH9g0154 HCH-Chr9:901841 3.60E-34 dispersed
HCH7g1740 HCH-Chr7:49094646 HCH9g0154 HCH-Chr9:901841 1.60E-18 dispersed
HCH9g0154 HCH-Chr9:901841 HCH9g0528 HCH-Chr9:3409055 2.00E-20 dispersed
HCH13g0809 HCH-Chr13:7825718 HCH9g0154 HCH-Chr9:901841 1.30E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34115 PF00046 Homeodomain 3.30E-18 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0154 K09338 - csv:101212142 360.533