Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0157 ATGAATAGTATAATCCACACCCCGGCGTCTAAATTCCGCCCTTTCCGGCGACTCTCCCTCGTAAAACCATCATCAGAATCCTCGTCGTCCAACTCCAACGAACAAGCGAATTACATTCTCTTGCGTTACCAGATACTCGACCCAGACAGCGATATCGTCGCGCAATGGAATCGTGTTTTTCTGGTTACATGTTTGATTGCATTGTTCATAGATCCTTTATATTTTTACACATCATCCGTTGGTGGCCCTGCATGCTTGACCACAGATACAGGATCAGGAGTTGTTATTACACTCTTCAGAACGGTAACAGATTTGTTTTTCATGTTGCATATGGTTTTGAAATTTAGAACAGCTTATGTGGCTCCCAGTTCTAGAGTTTTTGGAAGAGGAGAGCTTGTTATGGATGCAAGAGCCATTGCCACCAGATATCTGAAATCTGATTTTGTTATTGATCTTGCTGCTACTCTTCCCCTTCCACAAATTGTCATCTGGTTGGTGATTCCAGCAACAAGAAACTCAAGAGTTGACCATGCCAACAACACTCTTGCTCTCTTTGTTCTCTTCCAATATGTCCCTAGACTCTTCCTCATCTTCCCACTTAACCAACGTATCATCAAAACGACCGGTGTCGTAGCGAAAACCGCCTGGGCCGGAGCTGCCTACAATCTCATTCTCTACATGCTAGCCAGTCATGTTTTGGGATCTACGTGGTATCTATTGTCCATAGGGAGACAATTCTCTTGCTGGAAAACAGAATGTGCAAAGGAGAATGCATCCAAAGTTCTAGGTTGCATTCCCAGTTTCTTGGATTGCAACAGTTTAAAAACACCAGAAAGGCAGTATTGGCTCAATGTTACTAGAGTTACTTCTAGTTGTGATCCTAGGAACAAGAATATAAGCTTCAAGTTTGGAATGTTCTCTGATGCTTTCACCAGTGATGTTGCTTCCTCCCACTTTGTAGCCAAGTATTTCTATTGCCTTTGGTGGGGTCTCAGAAATTTAAGTTCATATGGGCAAACTTTGGATACAACTACATATATTGGCGAGACATTGTTTTGTATTTCTACATGCATATTCGGCTTGATATTATTTTCACAACTCATTGGCAACATGCAGACATATTTGCAATCAATGACAGTAAGACTTGAAGAATGGAGGATTAAGCGAAGAGACACAGAGGAATGGATGCGACGTCGCCAATTACCTCCGGATTTGCAAGAACGAGTTCGTCGCTTTGTTCAATATAAATGGCTGGCCACAAGAGGAGTCAATGAAGAATCTATATTGCGTTCGTTACCTATAGACCTTCGTCGGGAGATTCAACAGCATTTGTGTCTGTCGCTTGTTCGTCGTGTTCCTTTCTTTTCACAAATGGATGATCAGCTTCTTGATGCCATATGCGAACGTCTTGTCTCATCCTTGAGTACTCAGGGGAACTACATTGTCCGAGAGGATGAGCCGGTTAACGAGATGCTGTTTATTATAAGAGGACAACTTGAGAGCTCCACAACAAATGGCGGTCGATCTGGCTTCTTCAACTCCATCACATTGAAACCAGGTGATTTTTGTGGTGAAGAGCTACTAACATGGGCATTGATGCCAAGCTCCAGTCTAAATATGCCTTCTTCTACTCGAACCGTTCGAGCACTCACAGAAGTTGAAGCTTTTGCTCTCCGAGCGGAGGACCTTAAATTTGTAGCGGGTCAGTTCAAACGCTTACATAGCAAGAAACTACAACATGCCTTTAGGTACTATTCCCATCAATGGAGGACATGGGGTGCTTGCTTAATTCAAGTAGCATGGAGAAGGCATCAGAAGAGAAAATTAGCCAAGGATTTAGCTTTAAGGGAGAGCTCACGCTACATAGACCTGATAGAACAAGACATTGATTATGACGTTGAGCTCGCAGAAGAAAATTATGATAATGATGATGACGACGACAACGACAGTTATGACGGATCTTCATTGGATAACACAAACAAAATACAACATCTAGGGGCTACAATTTTGGCTTCAAAGTTTGCTGCCAACACAAGAAGAGGGGCTAATTTGAAAATGAAGACAAAGGATCCTACTTCTTCTTCAAGCTTAAAGATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTCTCGGTAGATGGGGGAGATGTTTGA 2154 42.43 MNSIIHTPASKFRPFRRLSLVKPSSESSSSNSNEQANYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTTDTGSGVVITLFRTVTDLFFMLHMVLKFRTAYVAPSSRVFGRGELVMDARAIATRYLKSDFVIDLAATLPLPQIVIWLVIPATRNSRVDHANNTLALFVLFQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKTECAKENASKVLGCIPSFLDCNSLKTPERQYWLNVTRVTSSCDPRNKNISFKFGMFSDAFTSDVASSHFVAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWLATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTQGNYIVREDEPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRTVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRHQKRKLAKDLALRESSRYIDLIEQDIDYDVELAEENYDNDDDDDNDSYDGSSLDNTNKIQHLGATILASKFAANTRRGANLKMKTKDPTSSSSLKMPKLFKPDEPDFSVDGGDV 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 926005 929079 - evm.model.ptg000007l.157 HCH9g0157 550789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0157 717 CDD CAP_ED 454 585 IPR000595 -
HCH9g0157 717 ProSiteProfiles cAMP/cGMP binding motif profile. 454 584 IPR000595 -
HCH9g0157 717 Gene3D Helix hairpin bin 381 445 - -
HCH9g0157 717 FunFam Cyclic nucleotide-gated ion channel 1 381 445 - -
HCH9g0157 717 Gene3D - 59 379 - -
HCH9g0157 717 SMART cnmp_10 454 585 IPR000595 -
HCH9g0157 717 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 30 694 - -
HCH9g0157 717 Pfam Ion transport protein 56 381 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0157 717 FunFam Cyclic nucleotide-gated ion channel 1 452 570 - -
HCH9g0157 717 MobiDBLite consensus disorder prediction 681 717 - -
HCH9g0157 717 Pfam Cyclic nucleotide-binding domain 477 564 IPR000595 -
HCH9g0157 717 SUPERFAMILY cAMP-binding domain-like 384 579 IPR018490 -
HCH9g0157 717 SUPERFAMILY Voltage-gated potassium channels 47 376 - -
HCH9g0157 717 Gene3D Jelly Rolls 452 572 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0292 HCH-Chr12:1652645 HCH9g0157 HCH-Chr9:926005 2.50E-240 dispersed
HCH8g0989 HCH-Chr8:45991506 HCH9g0157 HCH-Chr9:926005 7.40E-245 dispersed
HCH9g0157 HCH-Chr9:926005 HCH9g0186 HCH-Chr9:1095262 3.20E-184 dispersed
HCH8g1375 HCH-Chr8:48496899 HCH9g0157 HCH-Chr9:926005 1.70E-275 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0157 K05391 - csv:101216651 1208.36