Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0162 ATGGAGAGGAATTGGTTATACAGAGAATTTGCTCCATTAGCAGGCATGGTAGCAGCAGAATGTGCCACCGTTGGCTCCAACACCATTTACAAAGCAATCAGCGCTCAAGACATCAGCTATTATGTCTTCACCTTCTACACTTGTCTCTCTGCTTCTCTCGTTCTTCTTCCTTTTTCCTTCATCTTTCGCAGATCTGGAGTATTTCCTTCAAACAAGTTATCTTTTTTCTTCAAACTTACCTGCCTTTCTTCCATGGGGGTTTTGGGTCAGTTTTTTGGATATAAAGGATTGGAATTGAGTTCACCAACACTTGCTTCTGCTATCAGTAATCTTATCCCAGCTCTCACTTTCATCCTTGCTGTTCTTTTTGGGATGGAAAAGATAGCTTTAAGAAGCAGAAGCAGCATAGCCAAAATCACTGGCTCTGCAGTATCCATAGCAGGTGCATTGGTAGTGGTTCTTTATAAAGGTCCAGTTGTCCTTTCAAATCCATTTTCTGGACCAACAAGATTGAATCTTCATTCTCATATTCCATTGGGAGCTACCCAACCAAATTGGATCATGGGAGGCCTCTGCTTCTTTGCTCAATACCTTCTCAACTCTTTCTGGTACATTCTTCTGACCCAAATGGTGAACATGTATCCAGATGAGCTAGCTGTGGTGACATTGTACTATATTTTTGAGGCCATAATAGCTGCACCAATATGTCTATTGGCAGAAGGAAATTTGAGAGCTTGGAGACTAAAAAGCGGTCTTGAATTGGTTGCTGTTTTAAACTCGGGATGTGTGGGTCAATCCTTTGTCACTGCAATCCACACGTGGGGTGTACATTTCAAAGGGCCTGTTTATGTATCAAGTTTCAGACCACTTTCAATTGCCATTGCAGCTGCTACTGGTGTCCTTTTCCTTGGAGATGATCTCCATCTTGGAAGTGTGATTGGAGCAATGATAATAGCAAGTGGGTTTTATTCTATAATGTGGGGGAAGGCAAAAGAAGATAACTTGAAGGAACAGTGTGGTTTACCAAGCTTGGAATCTTCATCAAAAGACAAGACTCCATTGCTGCGAAGCTGTAAAGTTCAAGATGACTGA 1092 41.76 MERNWLYREFAPLAGMVAAECATVGSNTIYKAISAQDISYYVFTFYTCLSASLVLLPFSFIFRRSGVFPSNKLSFFFKLTCLSSMGVLGQFFGYKGLELSSPTLASAISNLIPALTFILAVLFGMEKIALRSRSSIAKITGSAVSIAGALVVVLYKGPVVLSNPFSGPTRLNLHSHIPLGATQPNWIMGGLCFFAQYLLNSFWYILLTQMVNMYPDELAVVTLYYIFEAIIAAPICLLAEGNLRAWRLKSGLELVAVLNSGCVGQSFVTAIHTWGVHFKGPVYVSSFRPLSIAIAAATGVLFLGDDLHLGSVIGAMIIASGFYSIMWGKAKEDNLKEQCGLPSLESSSKDKTPLLRSCKVQDD 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 968636 971487 + evm.model.ptg000007l.162 HCH9g0162 550794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0162 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 331 - -
HCH9g0162 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 156 - -
HCH9g0162 363 Pfam EamA-like transporter family 21 152 IPR000620 GO:0016020(InterPro)
HCH9g0162 363 PANTHER WAT1-RELATED PROTEIN 15 341 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0162 HCH-Chr9:968636 HCH9g0164 HCH-Chr9:979713 3.70E-120 dispersed
HCH9g0161 HCH-Chr9:965277 HCH9g0162 HCH-Chr9:968636 1.70E-96 tandem
HCH9g0162 HCH-Chr9:968636 HCH9g0163 HCH-Chr9:973279 4.40E-129 tandem
HCH1g1010 HCH-Chr1:58122645 HCH9g0162 HCH-Chr9:968636 3.20E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0162 - - - 0.0