Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0176 ATGGAACTAATACTTCTTATTCTCCTCACAACATTCTCATTTCCTTCTCTATCAAAATCCTCTCCTCTCACATCCAATTACTACCAAAAATCATGCCCAAATTTCAACCAAATAATCCAAGACACAGTCACAAACAAACAGATCACAAGCCCTTCCACCGCCGCCGGCACCCTCCGTCTCTTCCTCCACGACTGCCTCCCCAACGGCTGCGACGCCTCCGTCCTAATTTCCTCAACTCCTTTCAACAAAGCCGAACGTGATTCCGACATTAACCTCTCTCTCCCCGGCGACGCTTTCGATGTCGTCGTCCGTGCTAAAACCGCCCTCGAACTCTCTTGCCCTAACACCGTCTCGTGCGCCGACATTCTCGCTGTCGCCACTCGTGACCTCGTGACTATGGTCGGTGGTCCGTACTATAATGTTTTGTTGGGTCGTAAAGATGCTCGTGATTCCAAAGCTTCTACGGTTCCTGGGAATCTTCCAAAAGCCAATTCACCGATGACGGAAATTATTGATATTTTTCAGGCGAGAGGGTTTTCTAAGAAAGAAATAGTGGCGCTTTCTGGTGCTCACACAATTGGGTTTTCGCATTGTTCGGAGATTAGTTCTCAGATCTATAATTACAGTAAGACGTCGTCGTTTGATACGCAGTACAACCCACGATTTGCTGAAGGTTTACAGAGGGCTTGTACTGATTACAAAAAGAATCCAACTTTATCTGTTTTCAATGATATTATGACTCCGAATAAGTTTGATAACTCGTATTATCAGAATCTGCCTAAGGGTTTGGGGATCTTGAAATCTGATCATGGGTTGTATAACGATTGGAGGACGAGGCCGTTTGTCGAGGCGTATGCGGCCGATGAGAATAAATTCTTTCAGGATTTTGCTCGAGCTATGGAGAAGTTGAGTAATTATAATGTTAAGACTGGGAATCAAGGAGAGATTCGACATCGGTGTGATGCGGTTAATTGA 975 45.13 MELILLILLTTFSFPSLSKSSPLTSNYYQKSCPNFNQIIQDTVTNKQITSPSTAAGTLRLFLHDCLPNGCDASVLISSTPFNKAERDSDINLSLPGDAFDVVVRAKTALELSCPNTVSCADILAVATRDLVTMVGGPYYNVLLGRKDARDSKASTVPGNLPKANSPMTEIIDIFQARGFSKKEIVALSGAHTIGFSHCSEISSQIYNYSKTSSFDTQYNPRFAEGLQRACTDYKKNPTLSVFNDIMTPNKFDNSYYQNLPKGLGILKSDHGLYNDWRTRPFVEAYAADENKFFQDFARAMEKLSNYNVKTGNQGEIRHRCDAVN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1044251 1045225 + evm.model.ptg000007l.176 HCH9g0176 550808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0176 324 ProSiteProfiles Plant heme peroxidase family profile. 22 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 Gene3D Peroxidase, domain 2 161 303 - -
HCH9g0176 324 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 FunFam Peroxidase 26 170 - -
HCH9g0176 324 FunFam Peroxidase 161 303 - -
HCH9g0176 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
HCH9g0176 324 SUPERFAMILY Heme-dependent peroxidases 23 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 CDD secretory_peroxidase 23 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH9g0176 324 Pfam Peroxidase 40 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 PANTHER - 5 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 Gene3D - 26 324 - -
HCH9g0176 324 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH9g0176 324 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0475 HCH-Chr7:3579905 HCH9g0176 HCH-Chr9:1044251 7.20E-18 dispersed
HCH9g0176 HCH-Chr9:1044251 HCH14g0031 HCH-Chr14:3070299 1.30E-55 dispersed
HCH13g0794 HCH-Chr13:7615056 HCH9g0176 HCH-Chr9:1044251 2.60E-117 wgd
HCH3g0311 HCH-Chr3:1968209 HCH9g0176 HCH-Chr9:1044251 2.00E-109 wgd
HCH8g1358 HCH-Chr8:48399689 HCH9g0176 HCH-Chr9:1044251 1.10E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0176 K00430 - csv:101219829 557.755