Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0177 ATGGGCGGAGGAACAGAAGCTTTTCCCGATTTGGGTCGACACTGCCAGCACTCAGATTGCCACCAGCTTGATTTTCTTCCTTTCTCATGCGACGGTTGTCTAAAGGTATTTTGTGTAGAACATCGATCTTTCAAATCCCACGACTGCCCCAAACCCGATCAAAATAGCAGAAAAGTGGTGGTTTGTGAAATTTGTTCTACGTCAATTGAAACCACTGGGAAGGATGAGGGTGATGAAAAGAAGGTATTGGAAAGGCATGAGAAATCAGGAGATTGTGATCCGAGGAAGAAGAAGAAGCCGACGTGCTCGGTGCGGCGGTGCAGGGAGATATTGACGTTTTCCAATACTTGTGTGTGCAAAACTTGCCAATTGAAGGTGTGTTTGAAGCACCGGTTTCCAACGCAACATGCTTGCGGCCGGGCGTTGAAGACGGCGCCTGCTGCGGCGACGGTGGCTGCTGAGCGGTGGAATGACAAGTTCATGGCTGCATTGGCTTCAAGGAACGGGGTTGATTGTGGCAAGAGTGAGCGCCGGGCTGAGTCTCCTCCCAGTGCTCCCTCTGTTGAAGCTTGTTGA 576 50.69 MGGGTEAFPDLGRHCQHSDCHQLDFLPFSCDGCLKVFCVEHRSFKSHDCPKPDQNSRKVVVCEICSTSIETTGKDEGDEKKVLERHEKSGDCDPRKKKKPTCSVRRCREILTFSNTCVCKTCQLKVCLKHRFPTQHACGRALKTAPAAATVAAERWNDKFMAALASRNGVDCGKSERRAESPPSAPSVEAC 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1047732 1048401 + evm.model.ptg000007l.177 HCH9g0177 550809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0177 191 Pfam AN1-like Zinc finger 15 53 IPR000058 GO:0008270(InterPro)
HCH9g0177 191 Pfam AN1-like Zinc finger 102 140 IPR000058 GO:0008270(InterPro)
HCH9g0177 191 Gene3D - 76 157 IPR035896 -
HCH9g0177 191 ProSiteProfiles Zinc finger AN1-type profile. 9 57 IPR000058 GO:0008270(InterPro)
HCH9g0177 191 ProSiteProfiles Zinc finger AN1-type profile. 96 146 IPR000058 GO:0008270(InterPro)
HCH9g0177 191 SUPERFAMILY AN1-like Zinc finger 5 58 IPR035896 -
HCH9g0177 191 SUPERFAMILY AN1-like Zinc finger 89 146 IPR035896 -
HCH9g0177 191 Gene3D - 2 68 IPR035896 -
HCH9g0177 191 SMART AN1_Zf_4 102 143 IPR000058 GO:0008270(InterPro)
HCH9g0177 191 SMART AN1_Zf_4 15 54 IPR000058 GO:0008270(InterPro)
HCH9g0177 191 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 7 187 - GO:0005737(PANTHER)
HCH9g0177 191 MobiDBLite consensus disorder prediction 172 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0177 HCH-Chr9:1047732 HCH9g1095 HCH-Chr9:13040786 8.40E-31 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0177 - - - 0.0