Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0186 ATGTTTGATTGTGGAGGTTACAAATCTCAGTATATTTCTGGTCACAAAGAAAAATTTGTGAGGTTGGATGATTTGGATTCAAATTTATCAATGTCTTCTGGAACAAGTGGGATTAAGAGATGTAGATTTAATTTAGATGGATTGCCTTTTACCAATCGTTCAAAGCCAAGAAATCCATCAAAATCCTTTAGAAAAGGAGTTCAGAAAGGTTCTGATGGAATAAGGATGTTTGGTCGTTCTCTCAAATCTGGTGTCACACGTGTCGTGTTCCCAGAAGATCTCAAAGTGTCTGAGAAAAGGATTTTTGATCCTCAAGACAAATCTTTGTTGTTTTGGAACAAACTGTTTGTTTTGTGTTGTATTCTTGCTGTTTCTATTGATCCTCTTTTCTTTTATCTTCCTGTTTTCAACCATGCTTCTTATTGTTTGGGAATGGACACCAATTTAGCTGTCACCACAACGACTCTCCGAACGGCGGTCGATGTTTTTTACCTTATTCGAATGGGGTTTCAGTTTCGTACTGCTTATATAGCACCTTCTTCAAGAGTGTTTGGAAGGGGGGAACTTGTTATTGAACCTGCAGAGATTGCCAAGCGTTATCTTCAGCGTTATTTCATTGTTGATTTTCTCTCTGTGCTGCCACTTCCACAGGTTGTGGTGTGGAGGTTTCTTCACAGATCTAAAGGTTCTGAGGTGTTGGCTACAAAACAAGCATTGCTAAATATTGTGTTTCTTCAATATATTCCAAGATTCACTCGGTTTATACCTTTAAACATCGAGCTTAAAAAGACAGCTGGGGTTTTCGCTGAAAGTGCTTGGGCTGGTGCTGCTTACTATCTTCTCTTATATATGCTTGCTAGTCATATTGCTGGAGCTTTCTGGTATTTGCTTGCTGTTGAAAGAAATGATGCATGTTGGCGTCAAGCGTGCAAAAGCACCGGCAAATGTAACATAAACTATTTGTATTGTGGCAATAAGCATATGTCAGGCTACAAGGACTGGAGAAAAATCAGTGAAGAAGTTCTTACCGGTCATTGTTCTGCTGTTGGCGACAATTTACCGTTCAACTATGGCATTTACACGCAAGCTATATCATCTAGCATAGTCCAGTCCAAGACATTTTTCTCTAAATTCTGCTATTGCTTATGGTGGGGCCTGCAAAATTTGAGTACACTTGGTCAGGGGCTGCTCACCAGTACCTACCCTGGAGAAGTAATCTTTTCGATACTCATCGCAATTTCGGGACTCATCCTTTTTGCTCTTCTGATTGGAAATATGCAAACCTACCTTCAGTCTCTAACGGTTCGCCTTGAGGAGATGCGGATCAAGAGGCGTGACTCGGAGCAGTGGATGCATCATCGCCTGCTTCCACCAGACTTGAGGGAAAAAGTTAGGCGCTATGATCAATACAAATGGTTGGAAACTAGAGGAGTTGATGAAGAGAGCTTGGTTCAAAGTCTGCCTAAAGATCTAAGGAGGGACATCAAACGACACCTCTGTCTCAATTTGGTCAGAAGGGTGCCTCTGTTTGCCAATATGGATGAGCGATTGCTTGATGCCATTTGTGAACGTCTCAAGCCAAGTTTATACACAGAGAATACATACGTCGTGCGAGAAGGAGATCCGGTTGATGAGATGCTTTTCATCATCCGTGGTCGTCTTGAAAGTGTGACTACAGATGGTGGTAGAAGTGGATTTTTCAATCGAGGGGTTTTGAAAGAAGGTGATTTTTGTGGAGAGGAGCTTCTAACATGGGCGTTGGACCCCAAGTCTGGTGCTAATTTACCATCATCAACTCGAACCGTGCATGCTTTAACGGAGGTGGAGGCTTTTGCTTTAGAAGCAGAAGAGTTGAAGTTTGTTGCCAGTCAATTTAGACGACTTCATAGTAGGCAGGTGCAACACACCTTCCGTTTCTACTCTCAACAATGGAGAACTTGGGCTGCTATCTTTATCCAGGCTGCATGGCGTCGGTATTCCAAGAGGAAACTTGTAGAGCAACGCCGCAGGGAGGAGGAAGAGGAAGAGTTTGCCTATGAAAACGAAGGTGCGGCATCGGTCACACGTGCATTTAGCTCGTCTAGGCTTCGTGCAACCATATTTGCTTCCCGGTTTGCAGCCAACGCGCTTCGTGGTCATAGGCTTCGCAATGTGAGCAGCAGAAACTTGATAAACTTGCAGAAGCCCCCAGAGCCAGACTTTTCTGTTTATAAGGCAGAGTAG 2223 43.05 MFDCGGYKSQYISGHKEKFVRLDDLDSNLSMSSGTSGIKRCRFNLDGLPFTNRSKPRNPSKSFRKGVQKGSDGIRMFGRSLKSGVTRVVFPEDLKVSEKRIFDPQDKSLLFWNKLFVLCCILAVSIDPLFFYLPVFNHASYCLGMDTNLAVTTTTLRTAVDVFYLIRMGFQFRTAYIAPSSRVFGRGELVIEPAEIAKRYLQRYFIVDFLSVLPLPQVVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFTRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACKSTGKCNINYLYCGNKHMSGYKDWRKISEEVLTGHCSAVGDNLPFNYGIYTQAISSSIVQSKTFFSKFCYCLWWGLQNLSTLGQGLLTSTYPGEVIFSILIAISGLILFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTENTYVVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSGANLPSSTRTVHALTEVEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRYSKRKLVEQRRREEEEEEFAYENEGAASVTRAFSSSRLRATIFASRFAANALRGHRLRNVSSRNLINLQKPPEPDFSVYKAE 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1095262 1098515 + evm.model.ptg000007l.186 HCH9g0186 550818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0186 740 Gene3D Helix hairpin bin 436 500 - -
HCH9g0186 740 ProSiteProfiles cAMP/cGMP binding motif profile. 509 639 IPR000595 -
HCH9g0186 740 SUPERFAMILY cAMP-binding domain-like 439 629 IPR018490 -
HCH9g0186 740 SUPERFAMILY Voltage-gated potassium channels 104 431 - -
HCH9g0186 740 Pfam Cyclic nucleotide-binding domain 530 620 IPR000595 -
HCH9g0186 740 CDD CAP_ED 509 640 IPR000595 -
HCH9g0186 740 ProSiteProfiles IQ motif profile. 645 674 - -
HCH9g0186 740 Coils Coil 662 682 - -
HCH9g0186 740 Gene3D - 113 434 - -
HCH9g0186 740 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 86 717 - -
HCH9g0186 740 FunFam Cyclic nucleotide-gated ion channel 1 436 500 - -
HCH9g0186 740 Pfam Ion transport protein 111 436 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0186 740 Gene3D Jelly Rolls 507 627 IPR014710 -
HCH9g0186 740 SMART cnmp_10 509 640 IPR000595 -
HCH9g0186 740 FunFam Cyclic nucleotide-gated ion channel 1 507 625 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0868 HCH-Chr5:7137778 HCH9g0186 HCH-Chr9:1095262 2.90E-209 dispersed
HCH7g1699 HCH-Chr7:48882630 HCH9g0186 HCH-Chr9:1095262 1.40E-163 dispersed
HCH7g1700 HCH-Chr7:48899518 HCH9g0186 HCH-Chr9:1095262 6.10E-172 dispersed
HCH9g0157 HCH-Chr9:926005 HCH9g0186 HCH-Chr9:1095262 3.20E-184 dispersed
HCH9g0186 HCH-Chr9:1095262 HCH9g0582 HCH-Chr9:3892858 2.20E-172 dispersed
HCH10g0311 HCH-Chr10:2559090 HCH9g0186 HCH-Chr9:1095262 1.10E-304 transposed
HCH3g0019 HCH-Chr3:165911 HCH9g0186 HCH-Chr9:1095262 1.20E-109 transposed
HCH8g0989 HCH-Chr8:45991506 HCH9g0186 HCH-Chr9:1095262 2.70E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0186 K05391 - csv:101221166 1276.54