Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0201 ATGGGTTTGGCATCTAATGCTAATGTAACTATGATGGAAGTTTTGGATATGGATAAATCATCTAAAAAAGTAGTGAGGAAGAAGAAGAAGAAGAAGAAGAATAAAGATGAGAAAATTGAGGAAATTGGGTGTTGGGAGAAATTTACATTCATGGGTAGTTGCATGCCTTCCAGATCAAAGGTTGACAGCTCATTGAGTGGATCAAAAGTTATTAGCTTCATGAGTGGAACCAGTAACCATAATGAAACTAAATCTAGACAAGAAAGCAGTAGAGACATTCCTGCTCCTGCAATAGCATCCTCGAGAAGTACCAGTAATGCTGAAAGTGCTTCATCCACGCCGAAGTTCAGTGAGGAACTAAAAATTTCTTCTCAGCTTCGAAAATTCTCTTTTAATGAGCTCAAATTGTCTACTCGAAATTTCAGACCTGAGAGTCTTCTTGGTGAGGGTGGGTTTGGTTGTGTCTTCAAAGGGTGGATTGAGGAGAATGGGACTGGTCCTGTTAAGCCTGGTACCGGGCTTACGGTTGCGGTCAAGACCCTAAACCATGATGGACTTCAAGGCCATAAGGAGTGGCTTGCTGAAGTTAATTTTCTTGGTGACCTCATCCATCCTAACTTGGTTAAATTGATTGGTTACTGCATTGAAGACGATCAAAGGCTATTGGTTTATGAATTTATGCCTCGGGGGAGTTTGGAAAACCATCTCTTCAGAAGATCCTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCGAAGGGTCTTACTTTTCTTCATGAAGAAGCCAAAAGGCCAGTGATTTATCGTGATTTTAAAACATCTAATATCCTATTAGATGCGGATTACAATGCCAAGCTCTCAGATTTTGGTCTTGCCAAAGATGCTCCTGAAGGAGATAAAACTCACGTCTCTACCCGAGTTATGGGAACCTATGGCTATGCTGCACCTGAGTATGTTATGACTGGACACCTGACATCAAAAAGCGACGTCTACAGTTTTGGAGTAGTCTTGCTTGAAATGCTCACTGGACGAAGATCCATGGATAAAAATAGACCAAATGGGGAGCACAACCTTGTAGAATGGGCAAGACCACTACTTGGAGACAGGAGAAGGTTCTTCCGGCTGATTGATCCCCGTCTTGAAGGTCACTTCTCAATAAAAGGAGCACAAAAGATTGCACAGATAGCTGCTCATTGTCTTAGCCGTGACCCCAAAGCCAGACCCATGATGAGTGAGGTCGTTGAAAACTTAAAGCCTTTACCAAACCTGAAGGATATGGCTAGTTCTTCGTATTATTTTCAATCGATGCAAGTAGAGCGAGCCAGATCAAGTTCCGGTGTTAAAAATGGTGTAAGAATTCAGTCGATGTTTGTCGTGAGGAATGGACAGCATTTGAGAAGCCTGTCAAGTCCAAATGGTCCTCATGCTTCTCCATTCAATCATCTTCACCCGTCACCAAAACCTATCAAGAGAGAACAATAG 1494 42.24 MGLASNANVTMMEVLDMDKSSKKVVRKKKKKKKNKDEKIEEIGCWEKFTFMGSCMPSRSKVDSSLSGSKVISFMSGTSNHNETKSRQESSRDIPAPAIASSRSTSNAESASSTPKFSEELKISSQLRKFSFNELKLSTRNFRPESLLGEGGFGCVFKGWIEENGTGPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLTFLHEEAKRPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPLLGDRRRFFRLIDPRLEGHFSIKGAQKIAQIAAHCLSRDPKARPMMSEVVENLKPLPNLKDMASSSYYFQSMQVERARSSSGVKNGVRIQSMFVVRNGQHLRSLSSPNGPHASPFNHLHPSPKPIKREQ 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1180602 1184850 + evm.model.ptg000007l.201 HCH9g0201 550833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0201 497 FunFam Probable serine/threonine-protein kinase PBL8 227 441 - -
HCH9g0201 497 FunFam Serine/threonine-protein kinase BIK1 108 226 - -
HCH9g0201 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0201 497 MobiDBLite consensus disorder prediction 18 38 - -
HCH9g0201 497 MobiDBLite consensus disorder prediction 469 497 - -
HCH9g0201 497 PANTHER OS01G0588500 PROTEIN-RELATED 105 425 IPR050823 -
HCH9g0201 497 MobiDBLite consensus disorder prediction 94 114 - -
HCH9g0201 497 Gene3D Transferase(Phosphotransferase) domain 1 227 444 - -
HCH9g0201 497 Pfam Protein tyrosine and serine/threonine kinase 145 421 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0201 497 ProSiteProfiles Protein kinase domain profile. 141 427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0201 497 Gene3D Phosphorylase Kinase; domain 1 120 226 - -
HCH9g0201 497 MobiDBLite consensus disorder prediction 72 114 - -
HCH9g0201 497 SUPERFAMILY Protein kinase-like (PK-like) 115 421 IPR011009 -
HCH9g0201 497 ProSitePatterns Protein kinases ATP-binding region signature. 147 179 IPR017441 GO:0005524(InterPro)
HCH9g0201 497 CDD STKc_IRAK 147 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0025 HCH-Chr11:700368 HCH9g0201 HCH-Chr9:1180602 6.30E-55 dispersed
HCH3g1365 HCH-Chr3:51393000 HCH9g0201 HCH-Chr9:1180602 1.30E-124 dispersed
HCH4g1630 HCH-Chr4:15280664 HCH9g0201 HCH-Chr9:1180602 4.00E-123 dispersed
HCH7g1120 HCH-Chr7:43960087 HCH9g0201 HCH-Chr9:1180602 1.90E-98 dispersed
HCH8g0231 HCH-Chr8:10383003 HCH9g0201 HCH-Chr9:1180602 3.50E-88 dispersed
HCH8g0556 HCH-Chr8:42335865 HCH9g0201 HCH-Chr9:1180602 2.30E-115 dispersed
HCH8g0598 HCH-Chr8:42773162 HCH9g0201 HCH-Chr9:1180602 4.50E-112 dispersed
HCH8g0857 HCH-Chr8:45028191 HCH9g0201 HCH-Chr9:1180602 6.00E-138 dispersed
HCH9g0201 HCH-Chr9:1180602 HCH9g0676 HCH-Chr9:4497925 5.80E-124 dispersed
HCH9g0836 HCH-Chr9:5919215 HCH9g0201 HCH-Chr9:1180602 1.20E-58 dispersed
HCH1g0954 HCH-Chr1:57764722 HCH9g0201 HCH-Chr9:1180602 4.30E-204 wgd
HCH13g0758 HCH-Chr13:6799006 HCH9g0201 HCH-Chr9:1180602 5.20E-226 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81745 PF07714 PK_Tyr_Ser-Thr 2.80E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0201 - - - 0.0