Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0207 ATGGCAGGAAACAAAGTTGAATTATTGGTTATTTTGGTTTCTTTGGCAGTGCTGATTCCAACCATAAGGGCTGGCATTGCTGAATATGATGAGTACTTGCAGAAACAAGCTGATGAAGCCAAGAAAGCAGCTCTTGAGGCCTACCATTCTGAACCCATGAACATTACAGACCATTTCAATTCCCATGTTCATTTGGCTTTAGAAGGGAGAAACAGCACAAGGAGGAGCCTGAGACCGTACAGAGGGCCTTGCTTGGCCACTAACCCCATCGACCGCTGCTGGCGTTGTGACAGGAACTGGGCTACGAACCGCAAGAGATTGGCTAGATGCGTACTGGGTTTTGGCAGGAGAACCACAGGAGGCTTGAAAGGTCGCTACTATGTCGTCACTGACGCATCGGATAATGATGTCGTTAACCCGAAACGAGGTACTCTCCGTCACGCCGTCATACAAAAAGAGCCACTCTGGATCATTTTTGCTCGCAGCATGATCATTAAACTGTCCAAAGAGCTGTTGGTAACTAGCCACAAGACCATTGATGCACGTGGTGCCATTGTCCACATTGCCTATGGTGCTGGTATTAGCGTTCAGTTTGCTAGAAATGTAATCATCCATGGCCTTCGCATCCACCACGTCGTATCAACTGGCGGCGGAATGATCAGGGACTCCGTCGACCACATCGGGCTCCGAACAGTTAGCGATGGAGATGGTATCTCTATTTTTGGATCATCCCACATTTGGCTTGACCATCTCTCCATGTCCAACTGCCAAGATGGACTTATTGATGCAATTCAAGGCTCCACAGCAATTACTATCTCAAACTCCCATTTCACTCATCACAATGATGTGATGCTTTTTGGTGCAAGTGATTCCTATCAGGGAGACGCTATTATGCAAGTGACAGTGGCTTTCAATCATTTTGGAAAGGGATTGGTTCAAAGAATGCCAAGATGCAGATGGGGTTTCTTCCATGTTGTCAACAATGATTACACTCATTGGCTCATGTATGCCATTGGTGGCAGCCAACATCCTACCATTATCAGTCAGGGAAATCGCTTCATTGCCCCACCAAACCCTGCTGCAAGACAGATTACGAATCGGAACTATGCACCGGAGAGTGTATGGAGAACATGGACATGGAGGTCAGAGGGAGATCTGATGATGAATGGAGCATACTTTGTTCAAACTGGAAATCCAAGCAGAAGGAGGCCATACAGCAGGCATGACATGATTAAGGCTAAGCCTGGGACTTTTGTTAGGAGGCTCACACGCTTCTCCGGTTCGCTCAACTGCATACCGGGACGACCATGCTAA 1314 47.41 MAGNKVELLVILVSLAVLIPTIRAGIAEYDEYLQKQADEAKKAALEAYHSEPMNITDHFNSHVHLALEGRNSTRRSLRPYRGPCLATNPIDRCWRCDRNWATNRKRLARCVLGFGRRTTGGLKGRYYVVTDASDNDVVNPKRGTLRHAVIQKEPLWIIFARSMIIKLSKELLVTSHKTIDARGAIVHIAYGAGISVQFARNVIIHGLRIHHVVSTGGGMIRDSVDHIGLRTVSDGDGISIFGSSHIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDAIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFVQTGNPSRRRPYSRHDMIKAKPGTFVRRLTRFSGSLNCIPGRPC 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1220532 1222206 + evm.model.ptg000007l.207 HCH9g0207 550839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0207 437 SUPERFAMILY Pectin lyase-like 88 427 IPR011050 -
HCH9g0207 437 Pfam Pectate lyase, N terminus 26 77 IPR007524 GO:0030570(InterPro)
HCH9g0207 437 PANTHER PECTATE LYASE 18-RELATED 15 434 IPR045032 GO:0030570(InterPro)
HCH9g0207 437 Pfam Pectate lyase 194 353 IPR002022 -
HCH9g0207 437 SMART amb_all 162 359 IPR002022 -
HCH9g0207 437 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
HCH9g0207 437 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
HCH9g0207 437 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
HCH9g0207 437 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
HCH9g0207 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
HCH9g0207 437 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
HCH9g0207 437 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
HCH9g0207 437 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
HCH9g0207 437 Gene3D - 87 430 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0207 HCH-Chr9:1220532 HCH9g0554 HCH-Chr9:3632306 1.60E-117 dispersed
HCH1g0952 HCH-Chr1:57750682 HCH9g0207 HCH-Chr9:1220532 1.10E-187 wgd
HCH3g0276 HCH-Chr3:1761408 HCH9g0207 HCH-Chr9:1220532 2.30E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0207 K01728 - csv:101202789 783.482