Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0209 ATGGAGGGGCCTATGACAGTGAAGACTGAAGAGAACCCAAGAAGGCAGAGAATATGTTGGAGAGATGAAGGTCAAGGTCAAGCTCAGGCTATGAGGCGTGTCAAGAGACGGCGGAGAGACCCGGCTGCAGCTGCACCCGCATCTCATGATCAAACTAAGCAACCGGCTTCTGCTGATCAACCGGCTTCTGCTGCTCCGACCACTACTAAGAGAAGTTCAAGATTTCGTGGTGTCAGCAGACATAGATGGACTGGTCGGTTTGAAGCTCATTTATGGGATAAGCTGTCTTGGAACATGACACAGAAGAAGAAAGGGAAACAAGTTTACCTTGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTAAAGTATTGGGGAGCTACAACTATCACCAATTTCCCAGTATCAGAATATGAGAAGGAGATAGAGATAATGCAAACAATGACAAAAGAAGAATATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCTAAATATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGAAACAAGTACCTCTATCTTGGGACTTATGGTACCCAAGAGGAAGCTGCAAGAGCTTATGATATGGCAGCCATTGAATACAGAGGGATAAATGCAGTTACCAACTTCGACTGGAGCAATTACATGGCATGGTTGAAGCCTCATGCAGACGGCCATGCAACGCCCAATGAAGCGCATCCGACATCACAGTCTCACAAAGAACTTTGCACCTCCACCACCTACATCCCATCAGAGCAAGAAACTTCACTCTTTCAAACCGATCATTATGACGCAGATTACTTCCATTCCTTTCAAAAGCAAGAGGCTTCTGAAAGCTGCAGAACCGCTCTGATCACTTGCACCAAATCTTCTCCCTCGGCGCTCGGTCTCCTTCTTCGATCTTCGATTTTCAAGAAACTGGTTGAGACCAACTCAAATCTATCTGAGGATGAAACTGATGGAAAGGAGGCAAAGAATGAAGATCAGCTTCATAGTGACTTAGCTGAGTTTGGAGACCTCTTTTGTGACAGAATTGCAGACATCCCATTTGTTTGCAGCTCCAACAAAGATTTGCTGCAAGAAAGTGAGCTTCATTCGTTCTTTAACGGGACGTAA 1185 44.98 MEGPMTVKTEENPRRQRICWRDEGQGQAQAMRRVKRRRRDPAAAAPASHDQTKQPASADQPASAAPTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQVYLGAYDEEESAARAYDLAALKYWGATTITNFPVSEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPHADGHATPNEAHPTSQSHKELCTSTTYIPSEQETSLFQTDHYDADYFHSFQKQEASESCRTALITCTKSSPSALGLLLRSSIFKKLVETNSNLSEDETDGKEAKNEDQLHSDLAEFGDLFCDRIADIPFVCSSNKDLLQESELHSFFNGT 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1233045 1235145 + evm.model.ptg000007l.209 HCH9g0209 550841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0209 394 FunFam AP2-like ethylene-responsive transcription factor 175 236 - -
HCH9g0209 394 SUPERFAMILY DNA-binding domain 175 236 IPR016177 GO:0003677(InterPro)
HCH9g0209 394 MobiDBLite consensus disorder prediction 50 73 - -
HCH9g0209 394 FunFam AP2-like ethylene-responsive transcription factor 73 142 - -
HCH9g0209 394 CDD AP2 73 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0209 394 PRINTS Ethylene responsive element binding protein signature 216 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0209 394 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0209 394 SMART rav1_2 74 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0209 394 SMART rav1_2 176 240 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0209 394 MobiDBLite consensus disorder prediction 1 77 - -
HCH9g0209 394 Gene3D AP2/ERF domain 73 142 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0209 394 Gene3D AP2/ERF domain 175 235 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0209 394 CDD AP2 175 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0209 394 ProSiteProfiles AP2/ERF domain profile. 176 234 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0209 394 SUPERFAMILY DNA-binding domain 73 142 IPR016177 GO:0003677(InterPro)
HCH9g0209 394 ProSiteProfiles AP2/ERF domain profile. 74 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0209 394 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 273 - -
HCH9g0209 394 MobiDBLite consensus disorder prediction 7 21 - -
HCH9g0209 394 Pfam AP2 domain 175 226 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0209 394 Pfam AP2 domain 73 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0209 HCH-Chr9:1233045 HCH9g0608 HCH-Chr9:4070787 8.90E-43 dispersed
HCH4g1249 HCH-Chr4:8567549 HCH9g0209 HCH-Chr9:1233045 1.80E-74 transposed
HCH4g1622 HCH-Chr4:15075431 HCH9g0209 HCH-Chr9:1233045 3.50E-97 transposed
HCH8g0965 HCH-Chr8:45789040 HCH9g0209 HCH-Chr9:1233045 2.40E-79 transposed
HCH9g1376 HCH-Chr9:45279327 HCH9g0209 HCH-Chr9:1233045 2.10E-53 transposed
HCH8g1037 HCH-Chr8:46330493 HCH9g0209 HCH-Chr9:1233045 2.00E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34119 PF00847 AP2 2.00E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0209 - - - 0.0