Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g0209 | ATGGAGGGGCCTATGACAGTGAAGACTGAAGAGAACCCAAGAAGGCAGAGAATATGTTGGAGAGATGAAGGTCAAGGTCAAGCTCAGGCTATGAGGCGTGTCAAGAGACGGCGGAGAGACCCGGCTGCAGCTGCACCCGCATCTCATGATCAAACTAAGCAACCGGCTTCTGCTGATCAACCGGCTTCTGCTGCTCCGACCACTACTAAGAGAAGTTCAAGATTTCGTGGTGTCAGCAGACATAGATGGACTGGTCGGTTTGAAGCTCATTTATGGGATAAGCTGTCTTGGAACATGACACAGAAGAAGAAAGGGAAACAAGTTTACCTTGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTAAAGTATTGGGGAGCTACAACTATCACCAATTTCCCAGTATCAGAATATGAGAAGGAGATAGAGATAATGCAAACAATGACAAAAGAAGAATATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCTAAATATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGAAACAAGTACCTCTATCTTGGGACTTATGGTACCCAAGAGGAAGCTGCAAGAGCTTATGATATGGCAGCCATTGAATACAGAGGGATAAATGCAGTTACCAACTTCGACTGGAGCAATTACATGGCATGGTTGAAGCCTCATGCAGACGGCCATGCAACGCCCAATGAAGCGCATCCGACATCACAGTCTCACAAAGAACTTTGCACCTCCACCACCTACATCCCATCAGAGCAAGAAACTTCACTCTTTCAAACCGATCATTATGACGCAGATTACTTCCATTCCTTTCAAAAGCAAGAGGCTTCTGAAAGCTGCAGAACCGCTCTGATCACTTGCACCAAATCTTCTCCCTCGGCGCTCGGTCTCCTTCTTCGATCTTCGATTTTCAAGAAACTGGTTGAGACCAACTCAAATCTATCTGAGGATGAAACTGATGGAAAGGAGGCAAAGAATGAAGATCAGCTTCATAGTGACTTAGCTGAGTTTGGAGACCTCTTTTGTGACAGAATTGCAGACATCCCATTTGTTTGCAGCTCCAACAAAGATTTGCTGCAAGAAAGTGAGCTTCATTCGTTCTTTAACGGGACGTAA | 1185 | 44.98 | MEGPMTVKTEENPRRQRICWRDEGQGQAQAMRRVKRRRRDPAAAAPASHDQTKQPASADQPASAAPTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQVYLGAYDEEESAARAYDLAALKYWGATTITNFPVSEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPHADGHATPNEAHPTSQSHKELCTSTTYIPSEQETSLFQTDHYDADYFHSFQKQEASESCRTALITCTKSSPSALGLLLRSSIFKKLVETNSNLSEDETDGKEAKNEDQLHSDLAEFGDLFCDRIADIPFVCSSNKDLLQESELHSFFNGT | 394 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1233045 | 1235145 | + | evm.model.ptg000007l.209 | HCH9g0209 | 550841 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g0209 | 394 | FunFam | AP2-like ethylene-responsive transcription factor | 175 | 236 | - | - | |
HCH9g0209 | 394 | SUPERFAMILY | DNA-binding domain | 175 | 236 | IPR016177 | GO:0003677(InterPro) | |
HCH9g0209 | 394 | MobiDBLite | consensus disorder prediction | 50 | 73 | - | - | |
HCH9g0209 | 394 | FunFam | AP2-like ethylene-responsive transcription factor | 73 | 142 | - | - | |
HCH9g0209 | 394 | CDD | AP2 | 73 | 142 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g0209 | 394 | PRINTS | Ethylene responsive element binding protein signature | 216 | 236 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g0209 | 394 | PRINTS | Ethylene responsive element binding protein signature | 75 | 86 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g0209 | 394 | SMART | rav1_2 | 74 | 146 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g0209 | 394 | SMART | rav1_2 | 176 | 240 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g0209 | 394 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
HCH9g0209 | 394 | Gene3D | AP2/ERF domain | 73 | 142 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g0209 | 394 | Gene3D | AP2/ERF domain | 175 | 235 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g0209 | 394 | CDD | AP2 | 175 | 236 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g0209 | 394 | ProSiteProfiles | AP2/ERF domain profile. | 176 | 234 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g0209 | 394 | SUPERFAMILY | DNA-binding domain | 73 | 142 | IPR016177 | GO:0003677(InterPro) | |
HCH9g0209 | 394 | ProSiteProfiles | AP2/ERF domain profile. | 74 | 140 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g0209 | 394 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 53 | 273 | - | - | |
HCH9g0209 | 394 | MobiDBLite | consensus disorder prediction | 7 | 21 | - | - | |
HCH9g0209 | 394 | Pfam | AP2 domain | 175 | 226 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g0209 | 394 | Pfam | AP2 domain | 73 | 132 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH9g0209 | HCH-Chr9:1233045 | HCH9g0608 | HCH-Chr9:4070787 | 8.90E-43 | dispersed | |
HCH4g1249 | HCH-Chr4:8567549 | HCH9g0209 | HCH-Chr9:1233045 | 1.80E-74 | transposed | |
HCH4g1622 | HCH-Chr4:15075431 | HCH9g0209 | HCH-Chr9:1233045 | 3.50E-97 | transposed | |
HCH8g0965 | HCH-Chr8:45789040 | HCH9g0209 | HCH-Chr9:1233045 | 2.40E-79 | transposed | |
HCH9g1376 | HCH-Chr9:45279327 | HCH9g0209 | HCH-Chr9:1233045 | 2.10E-53 | transposed | |
HCH8g1037 | HCH-Chr8:46330493 | HCH9g0209 | HCH-Chr9:1233045 | 2.00E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34119 | PF00847 | AP2 | 2.00E-13 | CL0081 | HCH | TF |
Pathway information
