Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0225 ATGGACTTGACTCCTCTAACAACTTCTCATGGAACTGTTAAATCTCCTGAACCAGACTCTGAAACCCCAACCAGAATCCAACCCATCAAACCTTTTCCTTTTACTAATGGTGTTTTAAAGCGCCACCACCACCACTCCACGCCGCCGCCTCCGCAGCCGCCGCATCCAGTTTCTGTTATTTACAAAGAATGTCTCAAAAACCATGCTGCCAGTTTGGGAGGTCACGCTTTAGATGGTTGTGGAGAATTCATGCCTTCTCCCACTTCCACTCCCACTGATCCCACTTCCTTCAAATGCGCCGCCTGTGGCTGCCACCGTAATTTCCACCGCCGTGAGCCGGAAGAACCGATTTCCACAACTACTACTACTCATGTCATTGAATATCAACCTCATCATCGCCATCACCCACCGCCACCGCCTCTCGCTCTGGCCCCCGCTAATCGAAGCCCGAGTTCCGCTTCGCCACCGCCGATCTCCTCTTCTTACTACCCATCAGCTCCACATATGCTTTTGGCACTTTCCGGTGGTGGGTTAACGCCAGCGATGCCGGAAAATGTCACCGGCGGAGTAGTACTTCCATACTCGATGGTTACGCCGAGCCCGAATTCCAGGAAGCGATTTAGGACGAAGTTTACTCAAGATCAGAAGGATAAGATGTGTGAATTTGCTGAGAAAGTAGGATGGAAGATGCAGAAGAGAGATGAGGAAATGGTAAAAGAATTTTGCAGTGATATTGGAATTGATAAAGGGGTTCTTAAAGTTTGGATGCATAATAACAAGAACACATTCGGGAAGAAAGATGGGATTGGAATTGGGAGGAATAATACACTTGATGAGCATATTCACAATGATGATGACGACGACGATGAGGATAAAATGAACAACGGTAACGACGGCGGTGGCGGTGGAGGTGGCGGTGGCGGTGGCGATGGCGATGGACATACCGCCGGTACGAATGGGTCGTCGTCTTCTTCTTGA 978 49.39 MDLTPLTTSHGTVKSPEPDSETPTRIQPIKPFPFTNGVLKRHHHHSTPPPPQPPHPVSVIYKECLKNHAASLGGHALDGCGEFMPSPTSTPTDPTSFKCAACGCHRNFHRREPEEPISTTTTTHVIEYQPHHRHHPPPPPLALAPANRSPSSASPPPISSSYYPSAPHMLLALSGGGLTPAMPENVTGGVVLPYSMVTPSPNSRKRFRTKFTQDQKDKMCEFAEKVGWKMQKRDEEMVKEFCSDIGIDKGVLKVWMHNNKNTFGKKDGIGIGRNNTLDEHIHNDDDDDDEDKMNNGNDGGGGGGGGGGGDGDGHTAGTNGSSSSS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1329224 1330201 - evm.model.ptg000007l.225 HCH9g0225 550857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0225 325 SUPERFAMILY Homeodomain-like 197 265 IPR009057 -
HCH9g0225 325 MobiDBLite consensus disorder prediction 263 325 - -
HCH9g0225 325 MobiDBLite consensus disorder prediction 1 58 - -
HCH9g0225 325 Pfam ZF-HD protein dimerisation region 59 113 IPR006456 -
HCH9g0225 325 MobiDBLite consensus disorder prediction 1 22 - -
HCH9g0225 325 NCBIfam homeobox domain, ZF-HD class 204 261 IPR006455 -
HCH9g0225 325 MobiDBLite consensus disorder prediction 129 159 - -
HCH9g0225 325 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 112 IPR006456 -
HCH9g0225 325 FunFam Zinc-finger homeodomain protein 2 194 265 - -
HCH9g0225 325 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 61 112 IPR006456 -
HCH9g0225 325 Gene3D - 195 264 - -
HCH9g0225 325 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 262 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0225 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0231 HCH-Chr3:1495254 HCH9g0225 HCH-Chr9:1329224 6.90E-30 dispersed
HCH4g0729 HCH-Chr4:4696492 HCH9g0225 HCH-Chr9:1329224 1.00E-33 dispersed
HCH4g0887 HCH-Chr4:5688741 HCH9g0225 HCH-Chr9:1329224 2.00E-38 dispersed
HCH1g0927 HCH-Chr1:57583440 HCH9g0225 HCH-Chr9:1329224 1.90E-44 wgd
HCH13g0736 HCH-Chr13:6263603 HCH9g0225 HCH-Chr9:1329224 8.00E-77 wgd
HCH8g1303 HCH-Chr8:48074972 HCH9g0225 HCH-Chr9:1329224 1.00E-13 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0459 . 45 235 ZF-HD Transcription Factor Family AT5G65410 51.5 4.2e-47 185.3
HCH4g0254 . 5 230 ZF-HD Transcription Factor Family AT4G24660 54.2 7.5e-58 220.7
HCH4g0729 . 85 289 ZF-HD Transcription Factor Family AT4G24660 50.7 7.8e-47 184.1
HCH13g0736 . 3 267 ZF-HD Transcription Factor Family AT5G15210 52.5 1.2e-49 193.7
HCH9g0225 . 7 260 ZF-HD Transcription Factor Family AT5G15210 52.8 1.6e-46 183.3
HCH9g0225 . 1 263 ZF-HD Transcription Factor Family AT3G28920 66.3 3.2e-64 242.3
HCH13g0736 . 14 269 ZF-HD Transcription Factor Family AT3G28920 57.0 1.6e-55 213.4
HCH9g0225 . 22 270 ZF-HD Transcription Factor Family AT5G39760 63.2 7.3e-54 208.0
HCH13g0736 . 22 273 ZF-HD Transcription Factor Family AT5G39760 54.2 1.6e-48 190.3
HCH4g0254 . 5 230 ZF-HD Transcription Factor Family AT4G24660 54.2 7.5e-58 220.7
HCH4g0729 . 85 289 ZF-HD Transcription Factor Family AT4G24660 50.7 7.8e-47 184.1
HCH9g0225 . 22 270 ZF-HD Transcription Factor Family AT5G39760 63.2 7.3e-54 208.0
HCH13g0736 . 22 273 ZF-HD Transcription Factor Family AT5G39760 54.2 1.6e-48 190.3
HCH14g0459 . 45 235 ZF-HD Transcription Factor Family AT5G65410 51.5 4.2e-47 185.3
HCH13g0736 . 3 267 ZF-HD Transcription Factor Family AT5G15210 52.5 1.2e-49 193.7
HCH9g0225 . 7 260 ZF-HD Transcription Factor Family AT5G15210 52.8 1.6e-46 183.3
HCH9g0225 . 1 263 ZF-HD Transcription Factor Family AT3G28920 66.3 3.2e-64 242.3
HCH13g0736 . 14 269 ZF-HD Transcription Factor Family AT3G28920 57.0 1.6e-55 213.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34121 PF04770 ZF-HD_dimer 4.20E-29 No_clan HCH TF