Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0225 ATGGACTTGACTCCTCTAACAACTTCTCATGGAACTGTTAAATCTCCTGAACCAGACTCTGAAACCCCAACCAGAATCCAACCCATCAAACCTTTTCCTTTTACTAATGGTGTTTTAAAGCGCCACCACCACCACTCCACGCCGCCGCCTCCGCAGCCGCCGCATCCAGTTTCTGTTATTTACAAAGAATGTCTCAAAAACCATGCTGCCAGTTTGGGAGGTCACGCTTTAGATGGTTGTGGAGAATTCATGCCTTCTCCCACTTCCACTCCCACTGATCCCACTTCCTTCAAATGCGCCGCCTGTGGCTGCCACCGTAATTTCCACCGCCGTGAGCCGGAAGAACCGATTTCCACAACTACTACTACTCATGTCATTGAATATCAACCTCATCATCGCCATCACCCACCGCCACCGCCTCTCGCTCTGGCCCCCGCTAATCGAAGCCCGAGTTCCGCTTCGCCACCGCCGATCTCCTCTTCTTACTACCCATCAGCTCCACATATGCTTTTGGCACTTTCCGGTGGTGGGTTAACGCCAGCGATGCCGGAAAATGTCACCGGCGGAGTAGTACTTCCATACTCGATGGTTACGCCGAGCCCGAATTCCAGGAAGCGATTTAGGACGAAGTTTACTCAAGATCAGAAGGATAAGATGTGTGAATTTGCTGAGAAAGTAGGATGGAAGATGCAGAAGAGAGATGAGGAAATGGTAAAAGAATTTTGCAGTGATATTGGAATTGATAAAGGGGTTCTTAAAGTTTGGATGCATAATAACAAGAACACATTCGGGAAGAAAGATGGGATTGGAATTGGGAGGAATAATACACTTGATGAGCATATTCACAATGATGATGACGACGACGATGAGGATAAAATGAACAACGGTAACGACGGCGGTGGCGGTGGAGGTGGCGGTGGCGGTGGCGATGGCGATGGACATACCGCCGGTACGAATGGGTCGTCGTCTTCTTCTTGA 978 49.39 MDLTPLTTSHGTVKSPEPDSETPTRIQPIKPFPFTNGVLKRHHHHSTPPPPQPPHPVSVIYKECLKNHAASLGGHALDGCGEFMPSPTSTPTDPTSFKCAACGCHRNFHRREPEEPISTTTTTHVIEYQPHHRHHPPPPPLALAPANRSPSSASPPPISSSYYPSAPHMLLALSGGGLTPAMPENVTGGVVLPYSMVTPSPNSRKRFRTKFTQDQKDKMCEFAEKVGWKMQKRDEEMVKEFCSDIGIDKGVLKVWMHNNKNTFGKKDGIGIGRNNTLDEHIHNDDDDDDEDKMNNGNDGGGGGGGGGGGDGDGHTAGTNGSSSSS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1329224 1330201 - evm.model.ptg000007l.225 HCH9g0225 550857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0225 325 SUPERFAMILY Homeodomain-like 197 265 IPR009057 -
HCH9g0225 325 MobiDBLite consensus disorder prediction 263 325 - -
HCH9g0225 325 MobiDBLite consensus disorder prediction 1 58 - -
HCH9g0225 325 Pfam ZF-HD protein dimerisation region 59 113 IPR006456 -
HCH9g0225 325 MobiDBLite consensus disorder prediction 1 22 - -
HCH9g0225 325 NCBIfam homeobox domain, ZF-HD class 204 261 IPR006455 -
HCH9g0225 325 MobiDBLite consensus disorder prediction 129 159 - -
HCH9g0225 325 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 112 IPR006456 -
HCH9g0225 325 FunFam Zinc-finger homeodomain protein 2 194 265 - -
HCH9g0225 325 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 61 112 IPR006456 -
HCH9g0225 325 Gene3D - 195 264 - -
HCH9g0225 325 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 262 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0231 HCH-Chr3:1495254 HCH9g0225 HCH-Chr9:1329224 6.90E-30 dispersed
HCH4g0729 HCH-Chr4:4696492 HCH9g0225 HCH-Chr9:1329224 1.00E-33 dispersed
HCH4g0887 HCH-Chr4:5688741 HCH9g0225 HCH-Chr9:1329224 2.00E-38 dispersed
HCH1g0927 HCH-Chr1:57583440 HCH9g0225 HCH-Chr9:1329224 1.90E-44 wgd
HCH13g0736 HCH-Chr13:6263603 HCH9g0225 HCH-Chr9:1329224 8.00E-77 wgd
HCH8g1303 HCH-Chr8:48074972 HCH9g0225 HCH-Chr9:1329224 1.00E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34121 PF04770 ZF-HD_dimer 4.20E-29 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0225 - - - 0.0