Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0227 ATGGGTTCATTAGAGAATCAAAAACCATGCAATTGGGGTAATACTAACAATACAAATGAGGAAGAAGATTTCATTTCTTTGGGAAACCATCCAGATTCCTACCATCGTATCTCTTCTTTTTTTGGTGAAAGGTTTCCAGAACTTTACCCTTCTGAATTTTCAAGAAAGTTGGTGGCAGAGGTTATAGCAACTTATTTACTGGTTTTTGTCACGTGCGGTTCGGCTGCATTAAGCGCAAACGATGATCGACAAATATCGAAACTCGGAGCCTCCATCGCCGGAGGACTCATCGTCACTGTTATGATCTATGCCGTCGGACACATCTCCGGTGCCCACATGAACCCTGCTGTCACTTTAGCTTTTGCTGCTGTTCAACATTTTCCATTCAAACAGGTTCCATTTTATGCAGCAGCTCAACTAAGTGGAGCAACATCTGCAGCCTTTACATTACGCATACTATTTCATCCAATTAAACATGTAGGCACTACATCACCTTCAGGATCAGAGTTACAAGCTCTGCTCATGGAGATCGTCTTGTCTTTCTCTATGATGTTCGTCACTTCCGCCGTCGCAACCGACGCCAAAGCTAGAGGAGAGCTAGCAGGTGTGGCAGTTGGCTCAGCAGTATGTATCACATCCATCTTAGCTGGACCTATATCAGGAGGATCAATGAACCCTGCAAGGACAATAGGACCTGCAATTGCAAGTGCTTATTATAAAGGGATTTGGGTGTACATGGTTGGGCCAGTTGCTGGAACACTCTTGGGGGCATGGTCCTATAATTTTATCAGAGCTAGTGAAAATCTTGTGCACCCAACTTCCCATTCTAATGTTCGGCGCATAAGATCGGATGATAGAGATGTCGAAAAAGGACAACCTTTCAATTGA 888 43.92 MGSLENQKPCNWGNTNNTNEEEDFISLGNHPDSYHRISSFFGERFPELYPSEFSRKLVAEVIATYLLVFVTCGSAALSANDDRQISKLGASIAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVQHFPFKQVPFYAAAQLSGATSAAFTLRILFHPIKHVGTTSPSGSELQALLMEIVLSFSMMFVTSAVATDAKARGELAGVAVGSAVCITSILAGPISGGSMNPARTIGPAIASAYYKGIWVYMVGPVAGTLLGAWSYNFIRASENLVHPTSHSNVRRIRSDDRDVEKGQPFN 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1349192 1351340 - evm.model.ptg000007l.227 HCH9g0227 550859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0227 295 CDD MIP 55 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0227 295 MobiDBLite consensus disorder prediction 274 295 - -
HCH9g0227 295 MobiDBLite consensus disorder prediction 277 295 - -
HCH9g0227 295 Gene3D Glycerol uptake facilitator protein. 35 275 IPR023271 -
HCH9g0227 295 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0227 295 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0227 295 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0227 295 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0227 295 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0227 295 PRINTS Major intrinsic protein family signature 243 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0227 295 SUPERFAMILY Aquaporin-like 47 265 IPR023271 -
HCH9g0227 295 ProSitePatterns MIP family signature. 112 120 IPR022357 -
HCH9g0227 295 PANTHER AQUAPORIN NIP2-1 49 266 IPR034294 -
HCH9g0227 295 Pfam Major intrinsic protein 51 260 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0227 HCH-Chr9:1349192 HCH9g0229 HCH-Chr9:1366315 9.40E-106 proximal
HCH14g1015 HCH-Chr14:37395091 HCH9g0227 HCH-Chr9:1349192 6.70E-61 transposed
HCH5g0599 HCH-Chr5:4136146 HCH9g0227 HCH-Chr9:1349192 2.50E-50 transposed
HCH6g0285 HCH-Chr6:3991730 HCH9g0227 HCH-Chr9:1349192 1.20E-52 transposed
HCH6g0546 HCH-Chr6:30740994 HCH9g0227 HCH-Chr9:1349192 2.70E-45 transposed
HCH7g1173 HCH-Chr7:44642610 HCH9g0227 HCH-Chr9:1349192 1.70E-30 transposed
HCH9g0413 HCH-Chr9:2596657 HCH9g0227 HCH-Chr9:1349192 2.20E-53 transposed
HCH3g0252 HCH-Chr3:1613103 HCH9g0227 HCH-Chr9:1349192 1.60E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0227 K09874 - vvi:100265406 378.637