Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g0227 | ATGGGTTCATTAGAGAATCAAAAACCATGCAATTGGGGTAATACTAACAATACAAATGAGGAAGAAGATTTCATTTCTTTGGGAAACCATCCAGATTCCTACCATCGTATCTCTTCTTTTTTTGGTGAAAGGTTTCCAGAACTTTACCCTTCTGAATTTTCAAGAAAGTTGGTGGCAGAGGTTATAGCAACTTATTTACTGGTTTTTGTCACGTGCGGTTCGGCTGCATTAAGCGCAAACGATGATCGACAAATATCGAAACTCGGAGCCTCCATCGCCGGAGGACTCATCGTCACTGTTATGATCTATGCCGTCGGACACATCTCCGGTGCCCACATGAACCCTGCTGTCACTTTAGCTTTTGCTGCTGTTCAACATTTTCCATTCAAACAGGTTCCATTTTATGCAGCAGCTCAACTAAGTGGAGCAACATCTGCAGCCTTTACATTACGCATACTATTTCATCCAATTAAACATGTAGGCACTACATCACCTTCAGGATCAGAGTTACAAGCTCTGCTCATGGAGATCGTCTTGTCTTTCTCTATGATGTTCGTCACTTCCGCCGTCGCAACCGACGCCAAAGCTAGAGGAGAGCTAGCAGGTGTGGCAGTTGGCTCAGCAGTATGTATCACATCCATCTTAGCTGGACCTATATCAGGAGGATCAATGAACCCTGCAAGGACAATAGGACCTGCAATTGCAAGTGCTTATTATAAAGGGATTTGGGTGTACATGGTTGGGCCAGTTGCTGGAACACTCTTGGGGGCATGGTCCTATAATTTTATCAGAGCTAGTGAAAATCTTGTGCACCCAACTTCCCATTCTAATGTTCGGCGCATAAGATCGGATGATAGAGATGTCGAAAAAGGACAACCTTTCAATTGA | 888 | 43.92 | MGSLENQKPCNWGNTNNTNEEEDFISLGNHPDSYHRISSFFGERFPELYPSEFSRKLVAEVIATYLLVFVTCGSAALSANDDRQISKLGASIAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVQHFPFKQVPFYAAAQLSGATSAAFTLRILFHPIKHVGTTSPSGSELQALLMEIVLSFSMMFVTSAVATDAKARGELAGVAVGSAVCITSILAGPISGGSMNPARTIGPAIASAYYKGIWVYMVGPVAGTLLGAWSYNFIRASENLVHPTSHSNVRRIRSDDRDVEKGQPFN | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1349192 | 1351340 | - | evm.model.ptg000007l.227 | HCH9g0227 | 550859 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g0227 | 295 | CDD | MIP | 55 | 263 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0227 | 295 | MobiDBLite | consensus disorder prediction | 274 | 295 | - | - | |
HCH9g0227 | 295 | MobiDBLite | consensus disorder prediction | 277 | 295 | - | - | |
HCH9g0227 | 295 | Gene3D | Glycerol uptake facilitator protein. | 35 | 275 | IPR023271 | - | |
HCH9g0227 | 295 | PRINTS | Major intrinsic protein family signature | 175 | 193 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0227 | 295 | PRINTS | Major intrinsic protein family signature | 55 | 74 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0227 | 295 | PRINTS | Major intrinsic protein family signature | 131 | 150 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0227 | 295 | PRINTS | Major intrinsic protein family signature | 94 | 118 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0227 | 295 | PRINTS | Major intrinsic protein family signature | 206 | 228 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0227 | 295 | PRINTS | Major intrinsic protein family signature | 243 | 263 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH9g0227 | 295 | SUPERFAMILY | Aquaporin-like | 47 | 265 | IPR023271 | - | |
HCH9g0227 | 295 | ProSitePatterns | MIP family signature. | 112 | 120 | IPR022357 | - | |
HCH9g0227 | 295 | PANTHER | AQUAPORIN NIP2-1 | 49 | 266 | IPR034294 | - | |
HCH9g0227 | 295 | Pfam | Major intrinsic protein | 51 | 260 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH9g0227 | HCH-Chr9:1349192 | HCH9g0229 | HCH-Chr9:1366315 | 9.40E-106 | proximal | |
HCH14g1015 | HCH-Chr14:37395091 | HCH9g0227 | HCH-Chr9:1349192 | 6.70E-61 | transposed | |
HCH5g0599 | HCH-Chr5:4136146 | HCH9g0227 | HCH-Chr9:1349192 | 2.50E-50 | transposed | |
HCH6g0285 | HCH-Chr6:3991730 | HCH9g0227 | HCH-Chr9:1349192 | 1.20E-52 | transposed | |
HCH6g0546 | HCH-Chr6:30740994 | HCH9g0227 | HCH-Chr9:1349192 | 2.70E-45 | transposed | |
HCH7g1173 | HCH-Chr7:44642610 | HCH9g0227 | HCH-Chr9:1349192 | 1.70E-30 | transposed | |
HCH9g0413 | HCH-Chr9:2596657 | HCH9g0227 | HCH-Chr9:1349192 | 2.20E-53 | transposed | |
HCH3g0252 | HCH-Chr3:1613103 | HCH9g0227 | HCH-Chr9:1349192 | 1.60E-19 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH9g0227 | K09874 | - | vvi:100265406 | 378.637 |