Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0261 ATGGATCAACCAACTGGACGTGGAGGCAGCATGTCCAATATGTATCTAAAAAACTACAAGCTTGGGAAAACTCTTGGAATTGGCTTGACTGGAAAAGTAAAAGTTGCAGAACATAAATTAACTGGACTTAAAGTTGCCATTAAGATCCTCAACCGTTCAAAGATAGCGAGGCTGGGTCTGGAAGATAAAGTGACAAGAGAAATTAAAATAATGAAATTGTTTATGCATCCTCACGTGATACGACTGTATGAGGTTATCGAGACGCCAACAGACATCTATGTAGTGATGGAGTATGTGAAATCTGGAGAACTCTTTGATTATATTGTGGAGAGGGGTAGGTTGCAGGAAGATGAAGCCCGTAGATTCTTCCAGCAGATAATATCTGGGGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGACCTTAAGCCTGAGAATGTGCTTTTGGATTCCAAATTCAATGTAAAGATAGTTGATTTTGGTTTTAGCAATATAATGTACGATGGGCATTTTCTGAAAACGAGCTGTGGGAGTCCTAACTATGCTTCTCCAGAGGTTATTTCTGGGAAGTTGTATGCTGGCCCTGAAGTAGACGTATGGAGCTGTGGGGTTATATTGTATGCCCTTCTCTGCGGATCGCTTCCTTTTGATGATGAAAACATTCCCTTCCTTTATAAAAAAATAAAGCATGGAATGTATACTCTCCCAAGTTACTTATCATCTGCCGCAAGAAATTTGATCCCAGCGATGCTAATTGTTGATCCAGTGAAACGAATTACTATACCTCAAATTCGCCAGCATTCATGGTTTCAGGCTCATCTTCCACGCTATCTAGCCGTGAAACCACCTGACACTATCCTACAATCTGACAAGATCGATGAGGATATTCTGCAGAAAGTGGTTATGATGGGGTTTGATAGAAATCATCTGGTTGAATCTCTTCGTAACAGAAGTCAGAATGAGGCAACTGTCACCTATTACTTGCTGATGGGAAGTCGGTTCCCTGTTTCGGGTAGCTATCTTGGTGCTGAATTTCAGGAATCCATGGAATTTGAAGACTATGTGCATCCAAATGTTGTTGCTGTACCTTCTCTTGGACACCTTACTGGATGTATGGATAATCAAGTTATGGGACTCAGGCCTCAGATTCCTGTCGATGGGAAGTGGGCTCTTGGATTACAGTCTAAAGCAAATCCCCGTGATATAATGATGGAAGTCCTGAATGCCTTGCAAGAACTCAATGTGTGTTGGAAGAAGATTGGTCATTACAACATGAAATGTAGGTTGACACATAACATTCCAAGCCTTTGCAAAAGCATGGTTAGTAATCTTGCATATGATGATCATTATTTTGGCAATGATTCCGTCTTTATCGAGAAGGATGAGGTTTATAGCTCGCAAATTATGGTCATCAAGTTTGAAATTCAGCTTTATAAAACACAAGAGGAGAAGTATCTGCTTGATCTGCAGAGGGTCCAAGGCCCACAGTTTCTCTTCCTAAATCTTTGTGCCGCCTTCCTTTCCCAACTACGTGTCATCTAA 1545 41.17 MDQPTGRGGSMSNMYLKNYKLGKTLGIGLTGKVKVAEHKLTGLKVAIKILNRSKIARLGLEDKVTREIKIMKLFMHPHVIRLYEVIETPTDIYVVMEYVKSGELFDYIVERGRLQEDEARRFFQQIISGVEYCHRNMVVHRDLKPENVLLDSKFNVKIVDFGFSNIMYDGHFLKTSCGSPNYASPEVISGKLYAGPEVDVWSCGVILYALLCGSLPFDDENIPFLYKKIKHGMYTLPSYLSSAARNLIPAMLIVDPVKRITIPQIRQHSWFQAHLPRYLAVKPPDTILQSDKIDEDILQKVVMMGFDRNHLVESLRNRSQNEATVTYYLLMGSRFPVSGSYLGAEFQESMEFEDYVHPNVVAVPSLGHLTGCMDNQVMGLRPQIPVDGKWALGLQSKANPRDIMMEVLNALQELNVCWKKIGHYNMKCRLTHNIPSLCKSMVSNLAYDDHYFGNDSVFIEKDEVYSSQIMVIKFEIQLYKTQEEKYLLDLQRVQGPQFLFLNLCAAFLSQLRVI 514
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 1629552 1633289 - evm.model.ptg000007l.261 HCH9g0261 550893
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0261 514 FunFam Non-specific serine/threonine protein kinase 7 100 - -
HCH9g0261 514 SUPERFAMILY KA1-like 328 513 IPR028375 -
HCH9g0261 514 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524(InterPro)
HCH9g0261 514 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
HCH9g0261 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0261 514 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 15 287 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
HCH9g0261 514 Pfam UBA/TS-N domain 293 329 IPR015940 -
HCH9g0261 514 Gene3D Transferase(Phosphotransferase) domain 1 10 343 - -
HCH9g0261 514 Gene3D Kinase associated domain 1, KA1 393 512 - -
HCH9g0261 514 CDD UBA_SnRK1_plant 293 330 - -
HCH9g0261 514 Pfam Kinase associated domain 1 470 513 IPR001772 -
HCH9g0261 514 SMART serkin_6 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0261 514 FunFam Non-specific serine/threonine protein kinase 10 336 - -
HCH9g0261 514 SMART uba_6 294 331 IPR015940 -
HCH9g0261 514 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 465 513 IPR001772 -
HCH9g0261 514 FunFam Non-specific serine/threonine protein kinase 393 512 - -
HCH9g0261 514 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0261 514 CDD STKc_AMPK_alpha 16 271 - -
HCH9g0261 514 SUPERFAMILY Protein kinase-like (PK-like) 16 301 IPR011009 -
HCH9g0261 514 CDD AMPKA_C 389 511 - -
HCH9g0261 514 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1171 HCH-Chr2:54260952 HCH9g0261 HCH-Chr9:1629552 7.60E-40 dispersed
HCH6g0516 HCH-Chr6:23477724 HCH9g0261 HCH-Chr9:1629552 1.10E-221 dispersed
HCH7g0621 HCH-Chr7:6007773 HCH9g0261 HCH-Chr9:1629552 6.40E-56 dispersed
HCH9g0261 HCH-Chr9:1629552 HCH9g0827 HCH-Chr9:5800530 9.70E-66 dispersed
HCH9g0261 HCH-Chr9:1629552 HCH2g1466 HCH-Chr2:56197623 2.60E-71 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81746 PF00069 Pkinase 1.00E-74 CL0016 HCH PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0261 K07198 - gmx:547544 759.599