Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH9g0261 | ATGGATCAACCAACTGGACGTGGAGGCAGCATGTCCAATATGTATCTAAAAAACTACAAGCTTGGGAAAACTCTTGGAATTGGCTTGACTGGAAAAGTAAAAGTTGCAGAACATAAATTAACTGGACTTAAAGTTGCCATTAAGATCCTCAACCGTTCAAAGATAGCGAGGCTGGGTCTGGAAGATAAAGTGACAAGAGAAATTAAAATAATGAAATTGTTTATGCATCCTCACGTGATACGACTGTATGAGGTTATCGAGACGCCAACAGACATCTATGTAGTGATGGAGTATGTGAAATCTGGAGAACTCTTTGATTATATTGTGGAGAGGGGTAGGTTGCAGGAAGATGAAGCCCGTAGATTCTTCCAGCAGATAATATCTGGGGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGACCTTAAGCCTGAGAATGTGCTTTTGGATTCCAAATTCAATGTAAAGATAGTTGATTTTGGTTTTAGCAATATAATGTACGATGGGCATTTTCTGAAAACGAGCTGTGGGAGTCCTAACTATGCTTCTCCAGAGGTTATTTCTGGGAAGTTGTATGCTGGCCCTGAAGTAGACGTATGGAGCTGTGGGGTTATATTGTATGCCCTTCTCTGCGGATCGCTTCCTTTTGATGATGAAAACATTCCCTTCCTTTATAAAAAAATAAAGCATGGAATGTATACTCTCCCAAGTTACTTATCATCTGCCGCAAGAAATTTGATCCCAGCGATGCTAATTGTTGATCCAGTGAAACGAATTACTATACCTCAAATTCGCCAGCATTCATGGTTTCAGGCTCATCTTCCACGCTATCTAGCCGTGAAACCACCTGACACTATCCTACAATCTGACAAGATCGATGAGGATATTCTGCAGAAAGTGGTTATGATGGGGTTTGATAGAAATCATCTGGTTGAATCTCTTCGTAACAGAAGTCAGAATGAGGCAACTGTCACCTATTACTTGCTGATGGGAAGTCGGTTCCCTGTTTCGGGTAGCTATCTTGGTGCTGAATTTCAGGAATCCATGGAATTTGAAGACTATGTGCATCCAAATGTTGTTGCTGTACCTTCTCTTGGACACCTTACTGGATGTATGGATAATCAAGTTATGGGACTCAGGCCTCAGATTCCTGTCGATGGGAAGTGGGCTCTTGGATTACAGTCTAAAGCAAATCCCCGTGATATAATGATGGAAGTCCTGAATGCCTTGCAAGAACTCAATGTGTGTTGGAAGAAGATTGGTCATTACAACATGAAATGTAGGTTGACACATAACATTCCAAGCCTTTGCAAAAGCATGGTTAGTAATCTTGCATATGATGATCATTATTTTGGCAATGATTCCGTCTTTATCGAGAAGGATGAGGTTTATAGCTCGCAAATTATGGTCATCAAGTTTGAAATTCAGCTTTATAAAACACAAGAGGAGAAGTATCTGCTTGATCTGCAGAGGGTCCAAGGCCCACAGTTTCTCTTCCTAAATCTTTGTGCCGCCTTCCTTTCCCAACTACGTGTCATCTAA | 1545 | 41.17 | MDQPTGRGGSMSNMYLKNYKLGKTLGIGLTGKVKVAEHKLTGLKVAIKILNRSKIARLGLEDKVTREIKIMKLFMHPHVIRLYEVIETPTDIYVVMEYVKSGELFDYIVERGRLQEDEARRFFQQIISGVEYCHRNMVVHRDLKPENVLLDSKFNVKIVDFGFSNIMYDGHFLKTSCGSPNYASPEVISGKLYAGPEVDVWSCGVILYALLCGSLPFDDENIPFLYKKIKHGMYTLPSYLSSAARNLIPAMLIVDPVKRITIPQIRQHSWFQAHLPRYLAVKPPDTILQSDKIDEDILQKVVMMGFDRNHLVESLRNRSQNEATVTYYLLMGSRFPVSGSYLGAEFQESMEFEDYVHPNVVAVPSLGHLTGCMDNQVMGLRPQIPVDGKWALGLQSKANPRDIMMEVLNALQELNVCWKKIGHYNMKCRLTHNIPSLCKSMVSNLAYDDHYFGNDSVFIEKDEVYSSQIMVIKFEIQLYKTQEEKYLLDLQRVQGPQFLFLNLCAAFLSQLRVI | 514 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1629552 | 1633289 | - | evm.model.ptg000007l.261 | HCH9g0261 | 550893 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH9g0261 | 514 | FunFam | Non-specific serine/threonine protein kinase | 7 | 100 | - | - | |
| HCH9g0261 | 514 | SUPERFAMILY | KA1-like | 328 | 513 | IPR028375 | - | |
| HCH9g0261 | 514 | ProSitePatterns | Protein kinases ATP-binding region signature. | 25 | 48 | IPR017441 | GO:0005524(InterPro) | |
| HCH9g0261 | 514 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 292 | 332 | IPR015940 | - | |
| HCH9g0261 | 514 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 138 | 150 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| HCH9g0261 | 514 | PANTHER | MAP/MICROTUBULE AFFINITY-REGULATING KINASE | 15 | 287 | - | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
| HCH9g0261 | 514 | Pfam | UBA/TS-N domain | 293 | 329 | IPR015940 | - | |
| HCH9g0261 | 514 | Gene3D | Transferase(Phosphotransferase) domain 1 | 10 | 343 | - | - | |
| HCH9g0261 | 514 | Gene3D | Kinase associated domain 1, KA1 | 393 | 512 | - | - | |
| HCH9g0261 | 514 | CDD | UBA_SnRK1_plant | 293 | 330 | - | - | |
| HCH9g0261 | 514 | Pfam | Kinase associated domain 1 | 470 | 513 | IPR001772 | - | |
| HCH9g0261 | 514 | SMART | serkin_6 | 19 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH9g0261 | 514 | FunFam | Non-specific serine/threonine protein kinase | 10 | 336 | - | - | |
| HCH9g0261 | 514 | SMART | uba_6 | 294 | 331 | IPR015940 | - | |
| HCH9g0261 | 514 | ProSiteProfiles | Kinase associated domain 1 (KA1) profile. | 465 | 513 | IPR001772 | - | |
| HCH9g0261 | 514 | FunFam | Non-specific serine/threonine protein kinase | 393 | 512 | - | - | |
| HCH9g0261 | 514 | Pfam | Protein kinase domain | 19 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH9g0261 | 514 | CDD | STKc_AMPK_alpha | 16 | 271 | - | - | |
| HCH9g0261 | 514 | SUPERFAMILY | Protein kinase-like (PK-like) | 16 | 301 | IPR011009 | - | |
| HCH9g0261 | 514 | CDD | AMPKA_C | 389 | 511 | - | - | |
| HCH9g0261 | 514 | ProSiteProfiles | Protein kinase domain profile. | 19 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH2g1171 | HCH-Chr2:54260952 | HCH9g0261 | HCH-Chr9:1629552 | 7.60E-40 | dispersed | |
| HCH6g0516 | HCH-Chr6:23477724 | HCH9g0261 | HCH-Chr9:1629552 | 1.10E-221 | dispersed | |
| HCH7g0621 | HCH-Chr7:6007773 | HCH9g0261 | HCH-Chr9:1629552 | 6.40E-56 | dispersed | |
| HCH9g0261 | HCH-Chr9:1629552 | HCH9g0827 | HCH-Chr9:5800530 | 9.70E-66 | dispersed | |
| HCH9g0261 | HCH-Chr9:1629552 | HCH2g1466 | HCH-Chr2:56197623 | 2.60E-71 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 81746 | PF00069 | Pkinase | 1.00E-74 | CL0016 | HCH | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH9g0261 | K07198 | - | gmx:547544 | 759.599 |