Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0266 ATGGAGGGACTAAAAAGAAGGCTTACTGGTGGTGGGTCGTCGGCAATGACGGTGGCGGTGACGGTGGCGGTGGTGGTTCTGTGTGGTTTGGTGATGGAAGTTTCAGCAACTAAATGGACTGTGGGAGGAAACATGGGATGGAATACTAATGTTAATTATACTATCTGGGCTCAAGACAAGCACTTTTATTATGATGATTGGCTTTTTTTTGTGTATGACAGGAACCAAATGAATATTTTGGAAGTGAACAAGACAGACTATGAGGCTTGCAATTCTGATCACCCACTTCACAATTATACCACAGGAGCTGGAAGAGATGTGGTGCATTTGAATGTGACCAGGCCATATTACTTCATAAGCGGCAAAGGGTTCTGCTTTGGAGGCATGAAGCTAGCTATTCAGGTCGAACACCTACCTCCCCCGCCCTCTTCTTCCCCTTTGAACGAGAAGAGTAGCGCCCCGAGTTCTAGTCACATTAGCCACTTGCACATCATTTTAATAGGTGCTCTCGCCATTGGCGCTCTATGGGAAGCGTTCGTTCAGATTCGGTAG 552 46.56 MEGLKRRLTGGGSSAMTVAVTVAVVVLCGLVMEVSATKWTVGGNMGWNTNVNYTIWAQDKHFYYDDWLFFVYDRNQMNILEVNKTDYEACNSDHPLHNYTTGAGRDVVHLNVTRPYYFISGKGFCFGGMKLAIQVEHLPPPPSSSPLNEKSSAPSSSHISHLHIILIGALAIGALWEAFVQIR 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1655212 1656763 - evm.model.ptg000007l.266 HCH9g0266 550898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0266 183 SUPERFAMILY Cupredoxins 36 135 IPR008972 -
HCH9g0266 183 Gene3D - 35 138 IPR008972 -
HCH9g0266 183 FunFam Lamin-like protein 35 138 - -
HCH9g0266 183 Pfam Plastocyanin-like domain 47 129 IPR003245 GO:0009055(InterPro)
HCH9g0266 183 ProSiteProfiles Phytocyanin domain profile. 37 137 IPR003245 GO:0009055(InterPro)
HCH9g0266 183 PANTHER BLUE COPPER PROTEIN 25 142 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0266 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0265 HCH-Chr9:1652830 HCH9g0266 HCH-Chr9:1655212 3.40E-28 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0836 . 9 151 Phytocyanin Superfamily AT5G53870 53.1 3.0e-37 152.9
HCH3g0152 . 5 141 Phytocyanin Superfamily AT1G48940 57.6 1.4e-40 162.9
HCH12g1062 . 15 130 Phytocyanin Superfamily AT4G27520 61.2 3.8e-37 152.5
HCH9g0266 . 18 132 Phytocyanin Superfamily AT3G01070 63.6 2.4e-37 152.1
HCH4g0475 . 1 171 Phytocyanin Superfamily AT2G25060 55.5 1.2e-47 186.4
HCH4g0475 . 8 140 Phytocyanin Superfamily AT4G30590 50.4 1.0e-36 150.2
HCH9g0266 . 34 181 Phytocyanin Superfamily AT5G15350 54.7 1.1e-45 179.9
HCH4g0475 . 4 170 Phytocyanin Superfamily AT4G31840 53.8 3.0e-46 181.8
HCH3g0152 . 1 133 Phytocyanin Superfamily AT3G18590 57.0 5.7e-40 161.0
HCH4g1422 . 30 132 Phytocyanin Superfamily AT1G79800 66.0 1.4e-38 156.4
HCH2g0836 . 9 151 Phytocyanin Superfamily AT5G53870 53.1 3.0e-37 152.9
HCH12g1062 . 15 130 Phytocyanin Superfamily AT4G27520 61.2 3.8e-37 152.5
HCH2g0836 . 12 155 Phytocyanin Superfamily AT4G28365 52.8 2.8e-37 152.1
HCH3g0152 . 1 133 Phytocyanin Superfamily AT3G18590 57.0 5.7e-40 161.0
HCH3g0152 . 5 141 Phytocyanin Superfamily AT1G48940 57.6 1.4e-40 162.9
HCH4g1422 . 30 132 Phytocyanin Superfamily AT1G79800 66.0 1.4e-38 156.4
HCH6g1178 . 17 174 Phytocyanin Superfamily AT1G64640 50.9 6.0e-37 151.0
HCH4g0475 . 8 140 Phytocyanin Superfamily AT4G30590 50.4 1.0e-36 150.2
HCH4g0475 . 10 170 Phytocyanin Superfamily AT5G25090 53.8 1.4e-41 166.4
HCH4g0475 . 1 171 Phytocyanin Superfamily AT2G25060 55.5 1.2e-47 186.4
HCH4g0475 . 4 170 Phytocyanin Superfamily AT4G31840 53.8 3.0e-46 181.8
HCH9g0266 . 18 132 Phytocyanin Superfamily AT3G01070 63.6 2.4e-37 152.1
HCH9g0266 . 34 181 Phytocyanin Superfamily AT5G15350 54.7 1.1e-45 179.9
HCH2g1317 . 35 219 Phytocyanin Superfamily AT1G08500 60.8 1.1e-61 233.4
HCH8g0501 . 27 153 Phytocyanin Superfamily AT2G27035 55.1 6.1e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38