Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0270 ATGGCAACGGCAAAACCCCAAAGGTCACCGGAGGAAATAGAAGACATTATTCTCCGGAAAGTCTTCATCGTTTCTCTCACCGATTCCGATTCCAGTTCCGATTCCCGATTCGTTTACCTAGAACAAACCGCCGCTGAAATTTTGAGCGAAGGTAAAGAATTAAGGATTTCAAGAGATATAATGGAAAGAATTATAATTGATCGTTTATCAGGTGATTTTCCTTTAGCTGAATCCCCTTTTCAGTATTTGATCGGATGTTATCGTCGAGCTCATGACGAGAGCAAAAAAATCACTTCTATGAAAGATAAGAATTTGAAGTCTGAAATGGATTTGGTGCTTAAACAAGCTAAGAAATTAGTTGTTTCTTACTGTCGGATTCATTTAGGGAATCCTGATTTGTTTCCAAGTGGGAATTGGAAAGATAAATCAAATACTTCACTTTTGCTAAATATGATATTTTCTGAAGTTGGAAGCTCAGTGGATGGATTTGGTGGGAGTAGTAGTGGTGGCGCTGTTCAATGCCCGCCCGGTTTTTTGGAGGAGTTTCTTCGCGATTCAGATTTCGATACTTTAGACCCTATATTGAAAGGAGTATATGAGGATTCAAGGGGTAGTGTTCTTAAAGTTTCTGCTCTTGGGAACTTTCAGCAGCCCTTAAGGGCATTGTTGTTTTTGGTTAGTTTTTCAGTTGGTGCTAAATCTTTGGTGAATCATCCTTGGTGGATTCCTACCGGAAAATATTCGAATGGGCGTGTTATTGAGATGACTAGCATTTTGGGGCCGTTTTTCCATGTTAGTGCTCTTCCTGATCATGCCATTTTTAAGAGCCAACCTGATGTTGGGCAGCATTGCTTTTCGGAAGCATCAAGTCGTAGACCATCTGATTTATTATCTTCATTCACCACAATTAAAACAGTCATGAATAACTTATATGATGGCCTTACGGAAGTTCTTCTCTCCCTTCTTAAGAACACAGAGACCCGTGAAAATGTTCTCGAGTATCTTGCCGAGGTGATTAATAGAAACTCATCAAGGGCTCAAATACAGGTTGACCCTCTCTCCTGTGCAAGTTCAGGCATGTTTGTCAATCTCAGTGCTATTATGCTACGGCTCTGTGAGCCATTTCTAGATGCAAACTTTACCAAAAGAGATAAAATTGATCCAAACTATGTATGTTATGGTAATCGTTTGGAATTAAGAGGATTAACTGCTCTCCATGCCTCGTCAGAAGAAGTTACTGAATGGATTGATAATGGCACTCAGTTGAAAACTGATAACTCTAGGCAGTCCACTGACAGTGATAATCGCTTGCTACAATCTCAAGAGGCTTCTAGTTCTGGTAGTAATGCTACTGGATCTTCTACTTTGAATCCAAGATCAACTGGTGATAAAACTAGGTACCCTTTCATATGTGAGTGCTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCCTATTAAAAGCATTTTCAGACTTCAAACATTTAGTACAGGATATTTCCAGGTGTGAAGATACACTCTCCACGCTTAAAGACATGCAGGAACGGGGGTCTGCTCCGCAGATGGATGTGGATATAACTCGCATTGAGAAGGAAATAGAGTCATACACACAGGAAAAGCTTTGTTATGAAGCTCAATTACTGAGGGATGCAACTCTAATCCAGCAAGCTCTTTCTTTCTATCGATTAATGGTCATATGGTTAGTTGGCTTGGTCGGTGGATTTAAAATGCCTCTTCCATCAACTTGTCCAATGGAATTTGCATCAATGCCGGAGCATTTTGTGGAGGATGCAATGGAATTGCTTATATTTGCTTCTCGGATTCCAAAAGCTTTGGATGGTGCCATATTGGATGATTTTATGAACTTTATTATTATGTTCATGGCAAGTCCAGAATACATCAGAAATCCTTACCTAAGAGCAAAGATGGTTGAAGTTCTGAACTGCTGGATTCCTCGTAGAAGTGGATCATCTGGAACAGCTACTTTATTTGAAGGCCACCAACTAGCACTTGAATATCTTGTTAGGAATCTGTTGAAGCTTTATGTTGATATCGAATTCACTGGTTCACACACGCAGTTTTATGACAAGTTCAACATCCGTCATAATATTGCCGAACTTCTAGAATACCTTTGGCAGGTTCCTAGTCATCGCAATGCTTGGAGGATGATTGCCAAGGAAGAGGAAAAGGGTGTTTACTTGAATTTCTTGAACTTCCTGATCAATGATAGCATATATCTTCTTGACGAAAGTCTTAATAAGATTCTTGAACTTAAAGAACTAGAAGCTGAAATGTCAAATAGTGCAGAATGGGAGCGGCGACCTGTTCAAGAGAGGCAGGAGAGAACTCGGCTGTTTCACTCCCAAGAAAATATTATCCGAATTGATATGAAATTAGCAAATGAGGATGTGAGCATGCTGGCATTCACTTCAGAGCAAATTACAGCTCCTTTCCTACTTCCAGAGATGGTTGATAGGGTGGCGAGCATGCTTAATTATTTTCTGTTACAACTTGTTGGTCCTCAGCGAAAATCTCTAAGTCTGAAAGATCCAGAGAAGTATGAATTTCGTCCAAAGGAGTTACTTAAGCAGATCGTTCACATGTATGTTCATCTGGCTAGAGGTGATACAGAGAATATTTTCCCAGCTTCCATTTCAAAGGATGGACGATCGTATAATGAGCAGTTGTTTAATGCTGCATCAGTTGTACTTCAAAAAATTGGAGAAGATGGGAGGATTATACAGGAATTTATCGCTCTTGGTAACAAAGCCAAGGATGCAGCTTCTGAGGCCATGGATGCTGAAGCTACCTTGGGAGAGATACCAGATGAATTCCTGGACCCAATTCAATACACTTTAATGAAGGATCCAGTGATATTACCTTCTTCGAGGATCACGGTTGACCGACCTGTCATTCAGAGACATCTCCTCAGTGATAGTACTGACCCATTCAACCGTTCTCATCTCACTGCGGACATGCTGATTCCGAACGATGAGCTGAAAGAAAGAATTAAAGAATTTATCAGGTTACAAGAATTGAAGAGGAAACAACATGATGGTCTTAGTATGCAGACCACCAAGGCAACAATTCAAACCACAAATGGAGAAATGTTAATTGATTGA 3120 40.22 MATAKPQRSPEEIEDIILRKVFIVSLTDSDSSSDSRFVYLEQTAAEILSEGKELRISRDIMERIIIDRLSGDFPLAESPFQYLIGCYRRAHDESKKITSMKDKNLKSEMDLVLKQAKKLVVSYCRIHLGNPDLFPSGNWKDKSNTSLLLNMIFSEVGSSVDGFGGSSSGGAVQCPPGFLEEFLRDSDFDTLDPILKGVYEDSRGSVLKVSALGNFQQPLRALLFLVSFSVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQHCFSEASSRRPSDLLSSFTTIKTVMNNLYDGLTEVLLSLLKNTETRENVLEYLAEVINRNSSRAQIQVDPLSCASSGMFVNLSAIMLRLCEPFLDANFTKRDKIDPNYVCYGNRLELRGLTALHASSEEVTEWIDNGTQLKTDNSRQSTDSDNRLLQSQEASSSGSNATGSSTLNPRSTGDKTRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKDMQERGSAPQMDVDITRIEKEIESYTQEKLCYEAQLLRDATLIQQALSFYRLMVIWLVGLVGGFKMPLPSTCPMEFASMPEHFVEDAMELLIFASRIPKALDGAILDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRSGSSGTATLFEGHQLALEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNSAEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKELLKQIVHMYVHLARGDTENIFPASISKDGRSYNEQLFNAASVVLQKIGEDGRIIQEFIALGNKAKDAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPNDELKERIKEFIRLQELKRKQHDGLSMQTTKATIQTTNGEMLID 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1671466 1677870 - evm.model.ptg000007l.270 HCH9g0270 550902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0270 1039 PANTHER UBIQUITINATION FACTOR E4 8 1017 IPR045132 GO:0000151(InterPro)|GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030433(PANTHER)|GO:0034450(InterPro)|GO:0034450(PANTHER)|GO:0036503(InterPro)
HCH9g0270 1039 SUPERFAMILY RING/U-box 932 1008 - -
HCH9g0270 1039 CDD RING-Ubox_UBE4A 942 1008 - -
HCH9g0270 1039 FunFam Ubiquitin conjugation factor e4 a 939 1017 - -
HCH9g0270 1039 Coils Coil 525 545 - -
HCH9g0270 1039 Pfam Ubiquitin elongating factor core 259 923 IPR019474 GO:0000151(InterPro)|GO:0006511(InterPro)|GO:0016567(InterPro)|GO:0034450(InterPro)
HCH9g0270 1039 MobiDBLite consensus disorder prediction 416 459 - -
HCH9g0270 1039 ProSiteProfiles U-box domain profile. 939 1013 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH9g0270 1039 Pfam U-box domain 940 1008 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH9g0270 1039 SMART Ubox_2 943 1006 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH9g0270 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 939 1018 IPR013083 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0270 K10597 - csv:101211398 1779.61