Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g0272 | ATGGGGTTAAAATTTACAAAACATGGTCATGGGAAGGTGGAAAGCCTCAGTTTGCAGCACCAACTGATAAATTATCTTTCAAAAAGCTTTTATATTCGTAATTTGGTATCTAAGCAAAGGAGGCGAATGCTTGTGGGTGGTTATGATCTTGATATGTCATACATCACGGATCGCGTATTGGCAATGTCATTTCCTTCCGAACGCATACGGGCAATGTATCGTAATCCATTATGGCAGGTTAAGTCTGTTTTGGATATGAGACATCCAGGACATTATAAGATCTATAATCTATGTATAGAAGAATCATATGATCCATCACATTTTCATGGCCGCGTGGAGACGTTTCCTTTTGATGATAATCATGTCCCCCCACTACAGATGATCAAACTTTTCTGTCAAAGTGTTTCTTCATGGCTATCGTCCAACCCAAAGAATATTGCTGTTGTACACTGCATGGCTGGAAAAGGTCGAACGGGCTTAATGGTATGTGCCTACTTAATTTATTGTGGCATGTCTGTGGAGGATGCACTGCACCTGTATGCTCAGAGGCGAACAACCAATAACGAAGGAGTCTCAATTCCAAGCCAACGGCGATATGTGGGTTACTGGGCGAAGTCACTTTATTTTCCCAAGGGAGTTCATATTGGACCTCCAGAGGTGAAGTTGCCCAAACAATGTAGGAGGGAATTGCAGAGAATACGTCTATATGACACCGTTAACACTGAATCAATTTTCTTTGTGATCTCAGAATCGCAAGAGGTTCCTTCTCAGCTATACCGTCCATCTATGGAACTTACCAGGAATTGTTGCAGGCAATTTAAGAGAGGTTATGAGAGAAATAACAGTCCTCGTTATTTTCTATCTTTTGTTCAAGGCGATCAAGAAAATAAATCAGAACCGGAACCTCATCTTGTTGTTCAAATGGACACGGAGCGTTCAGCACTATATCACAAGACCTGCCTTGACTACAATTTTGAGAAGCCTTTACCATTAACTGGAGACGTGCGCATCATATTCTATGCAAAGATGTTTGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCTTTTATCACAAACAGCATACTTCAGCTGAGATTGCAGGATTTGGATAAAGTTGGAAAGAGGGGAAGGTCAATTTGTGGTCCATCCTTCTGCTTGGAATTGTTATTTGGTCCTGCCAATACAGAACACTCATTTTCGAGTTCGTCTTCATCGGACGGTGGAGATGTTAGTGATGATTTGCCCTGA | 1251 | 41.73 | MGLKFTKHGHGKVESLSLQHQLINYLSKSFYIRNLVSKQRRRMLVGGYDLDMSYITDRVLAMSFPSERIRAMYRNPLWQVKSVLDMRHPGHYKIYNLCIEESYDPSHFHGRVETFPFDDNHVPPLQMIKLFCQSVSSWLSSNPKNIAVVHCMAGKGRTGLMVCAYLIYCGMSVEDALHLYAQRRTTNNEGVSIPSQRRYVGYWAKSLYFPKGVHIGPPEVKLPKQCRRELQRIRLYDTVNTESIFFVISESQEVPSQLYRPSMELTRNCCRQFKRGYERNNSPRYFLSFVQGDQENKSEPEPHLVVQMDTERSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFITNSILQLRLQDLDKVGKRGRSICGPSFCLELLFGPANTEHSFSSSSSSDGGDVSDDLP | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1682633 | 1686357 | - | evm.model.ptg000007l.272 | HCH9g0272 | 550904 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g0272 | 416 | CDD | PTP_PTEN | 51 | 205 | IPR045101 | GO:0016791(InterPro) | |
HCH9g0272 | 416 | Pfam | C2 domain of PTEN tumour-suppressor protein | 314 | 392 | IPR014020 | - | |
HCH9g0272 | 416 | Gene3D | - | 276 | 396 | - | - | |
HCH9g0272 | 416 | SMART | PTEN_C2_2 | 223 | 393 | IPR014020 | - | |
HCH9g0272 | 416 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 48 | 204 | IPR029021 | - | |
HCH9g0272 | 416 | ProSiteProfiles | C2 tensin-type domain profile. | 241 | 394 | IPR014020 | - | |
HCH9g0272 | 416 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 41 | 210 | IPR029023 | - | |
HCH9g0272 | 416 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 298 | 393 | IPR035892 | - | |
HCH9g0272 | 416 | Gene3D | Protein tyrosine phosphatase superfamily | 28 | 208 | IPR029021 | - | |
HCH9g0272 | 416 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 149 | 159 | IPR016130 | GO:0016311(InterPro) | |
HCH9g0272 | 416 | FunFam | Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN | 28 | 210 | - | - | |
HCH9g0272 | 416 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 30 | 396 | IPR051281 | GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER) | |
HCH9g0272 | 416 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 125 | 184 | IPR000387 | GO:0016311(InterPro) | |
HCH9g0272 | 416 | Pfam | Polymorphic toxin system, DSP-PTPase phosphatase | 113 | 170 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0309 | HCH-Chr14:31751854 | HCH9g0272 | HCH-Chr9:1682633 | 6.30E-40 | dispersed | |
HCH9g0272 | HCH-Chr9:1682633 | HCH7g0674 | HCH-Chr7:7539355 | 9.70E-40 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH9g0272 | K01110 | - | csv:101212127 | 727.628 |