Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0272 ATGGGGTTAAAATTTACAAAACATGGTCATGGGAAGGTGGAAAGCCTCAGTTTGCAGCACCAACTGATAAATTATCTTTCAAAAAGCTTTTATATTCGTAATTTGGTATCTAAGCAAAGGAGGCGAATGCTTGTGGGTGGTTATGATCTTGATATGTCATACATCACGGATCGCGTATTGGCAATGTCATTTCCTTCCGAACGCATACGGGCAATGTATCGTAATCCATTATGGCAGGTTAAGTCTGTTTTGGATATGAGACATCCAGGACATTATAAGATCTATAATCTATGTATAGAAGAATCATATGATCCATCACATTTTCATGGCCGCGTGGAGACGTTTCCTTTTGATGATAATCATGTCCCCCCACTACAGATGATCAAACTTTTCTGTCAAAGTGTTTCTTCATGGCTATCGTCCAACCCAAAGAATATTGCTGTTGTACACTGCATGGCTGGAAAAGGTCGAACGGGCTTAATGGTATGTGCCTACTTAATTTATTGTGGCATGTCTGTGGAGGATGCACTGCACCTGTATGCTCAGAGGCGAACAACCAATAACGAAGGAGTCTCAATTCCAAGCCAACGGCGATATGTGGGTTACTGGGCGAAGTCACTTTATTTTCCCAAGGGAGTTCATATTGGACCTCCAGAGGTGAAGTTGCCCAAACAATGTAGGAGGGAATTGCAGAGAATACGTCTATATGACACCGTTAACACTGAATCAATTTTCTTTGTGATCTCAGAATCGCAAGAGGTTCCTTCTCAGCTATACCGTCCATCTATGGAACTTACCAGGAATTGTTGCAGGCAATTTAAGAGAGGTTATGAGAGAAATAACAGTCCTCGTTATTTTCTATCTTTTGTTCAAGGCGATCAAGAAAATAAATCAGAACCGGAACCTCATCTTGTTGTTCAAATGGACACGGAGCGTTCAGCACTATATCACAAGACCTGCCTTGACTACAATTTTGAGAAGCCTTTACCATTAACTGGAGACGTGCGCATCATATTCTATGCAAAGATGTTTGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCTTTTATCACAAACAGCATACTTCAGCTGAGATTGCAGGATTTGGATAAAGTTGGAAAGAGGGGAAGGTCAATTTGTGGTCCATCCTTCTGCTTGGAATTGTTATTTGGTCCTGCCAATACAGAACACTCATTTTCGAGTTCGTCTTCATCGGACGGTGGAGATGTTAGTGATGATTTGCCCTGA 1251 41.73 MGLKFTKHGHGKVESLSLQHQLINYLSKSFYIRNLVSKQRRRMLVGGYDLDMSYITDRVLAMSFPSERIRAMYRNPLWQVKSVLDMRHPGHYKIYNLCIEESYDPSHFHGRVETFPFDDNHVPPLQMIKLFCQSVSSWLSSNPKNIAVVHCMAGKGRTGLMVCAYLIYCGMSVEDALHLYAQRRTTNNEGVSIPSQRRYVGYWAKSLYFPKGVHIGPPEVKLPKQCRRELQRIRLYDTVNTESIFFVISESQEVPSQLYRPSMELTRNCCRQFKRGYERNNSPRYFLSFVQGDQENKSEPEPHLVVQMDTERSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFITNSILQLRLQDLDKVGKRGRSICGPSFCLELLFGPANTEHSFSSSSSSDGGDVSDDLP 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1682633 1686357 - evm.model.ptg000007l.272 HCH9g0272 550904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0272 416 CDD PTP_PTEN 51 205 IPR045101 GO:0016791(InterPro)
HCH9g0272 416 Pfam C2 domain of PTEN tumour-suppressor protein 314 392 IPR014020 -
HCH9g0272 416 Gene3D - 276 396 - -
HCH9g0272 416 SMART PTEN_C2_2 223 393 IPR014020 -
HCH9g0272 416 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 48 204 IPR029021 -
HCH9g0272 416 ProSiteProfiles C2 tensin-type domain profile. 241 394 IPR014020 -
HCH9g0272 416 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
HCH9g0272 416 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 298 393 IPR035892 -
HCH9g0272 416 Gene3D Protein tyrosine phosphatase superfamily 28 208 IPR029021 -
HCH9g0272 416 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311(InterPro)
HCH9g0272 416 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 28 210 - -
HCH9g0272 416 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 30 396 IPR051281 GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER)
HCH9g0272 416 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 125 184 IPR000387 GO:0016311(InterPro)
HCH9g0272 416 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 113 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0309 HCH-Chr14:31751854 HCH9g0272 HCH-Chr9:1682633 6.30E-40 dispersed
HCH9g0272 HCH-Chr9:1682633 HCH7g0674 HCH-Chr7:7539355 9.70E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0272 K01110 - csv:101212127 727.628