Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0288 ATGGCAAATTCCAACATTTTAATTGTTGGGTTCGTGTTTTTAAGCATTTTTGTGAAAGCCATGGGCATGAGAATTCCCATCGGTGAGAAGAATGTCGATCAAACGTGGTACGATGCCCATGCTACATTTTACGGTGATATGGGCGGCGGCGAAACTATGCAGGGAGCTTGTGGATATGGAAACCTATTCGAGCAAGGGTACGGTCTACGAACAGCAGCATTAAGCACCGCCCTGTTCAACAACGGACAAACATGCGGCGCTTGTTTTGAAATAATGTGCGTAGACGATCCTCAATGGTGCAAACCCAACGCCGGCACCATCAAGATCACGGCCACCAATTTCTGCCCTCCAGACTACACCAAAACTCAGGACATTTGGTGCAATCCCCCACAAAAGCACTTCGATTTAACCCTCAAAATGTTTACCAGAATCGCCTACTACAGGGCCGGAATAGTCCCCGTCCATTACCGGAGAATTCCATGCCGCAAACGGGGCGGTGTCAAATTCGAACTCAAAGGAATTCCTTACTGGTTGAGTGTTTTGGTTTACAACGTTGGCGGCGCCGGCGATGTTGTTAACGTTAAAATAAAAGGTTCGAATACGGATTGGCTTCAAATGTCGAGGAATTGGGGACAGAATTGGAATGTCGGAGGAATATTGTCGGGGCAAAGTCTGTCTTTTCAAGTTACTACGAGTGATTGGAGAGTTGTTGAATTTGATAATGTCGTGCCTGGTAATTGGCAATTTGGGCAGACCTTCCAAGGATGGTCCAATTTCTAA 780 46.41 MANSNILIVGFVFLSIFVKAMGMRIPIGEKNVDQTWYDAHATFYGDMGGGETMQGACGYGNLFEQGYGLRTAALSTALFNNGQTCGACFEIMCVDDPQWCKPNAGTIKITATNFCPPDYTKTQDIWCNPPQKHFDLTLKMFTRIAYYRAGIVPVHYRRIPCRKRGGVKFELKGIPYWLSVLVYNVGGAGDVVNVKIKGSNTDWLQMSRNWGQNWNVGGILSGQSLSFQVTTSDWRVVEFDNVVPGNWQFGQTFQGWSNF 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1772104 1773841 + evm.model.ptg000007l.288 HCH9g0288 550920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0288 259 Pfam Expansin C-terminal domain 167 244 IPR007117 -
HCH9g0288 259 Gene3D - 166 259 IPR036749 -
HCH9g0288 259 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576(InterPro)
HCH9g0288 259 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576(InterPro)
HCH9g0288 259 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576(InterPro)
HCH9g0288 259 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576(InterPro)
HCH9g0288 259 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576(InterPro)
HCH9g0288 259 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576(InterPro)
HCH9g0288 259 Pfam Lytic transglycolase 71 156 IPR009009 -
HCH9g0288 259 Gene3D - 26 162 IPR036908 -
HCH9g0288 259 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
HCH9g0288 259 PANTHER EXPANSIN-A15 12 255 IPR002963 GO:0009664(InterPro)
HCH9g0288 259 SUPERFAMILY Barwin-like endoglucanases 35 184 IPR036908 -
HCH9g0288 259 CDD DPBB_EXPA_N 36 161 - -
HCH9g0288 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
HCH9g0288 259 PRINTS Expansin signature 107 117 IPR002963 GO:0009664(InterPro)
HCH9g0288 259 PRINTS Expansin signature 141 154 IPR002963 GO:0009664(InterPro)
HCH9g0288 259 PRINTS Expansin signature 66 80 IPR002963 GO:0009664(InterPro)
HCH9g0288 259 PRINTS Expansin signature 165 177 IPR002963 GO:0009664(InterPro)
HCH9g0288 259 PRINTS Expansin signature 212 233 IPR002963 GO:0009664(InterPro)
HCH9g0288 259 PRINTS Expansin signature 124 141 IPR002963 GO:0009664(InterPro)
HCH9g0288 259 PRINTS Expansin signature 93 104 IPR002963 GO:0009664(InterPro)
HCH9g0288 259 PRINTS Expansin signature 241 257 IPR002963 GO:0009664(InterPro)
HCH9g0288 259 PRINTS Expansin signature 177 198 IPR002963 GO:0009664(InterPro)
HCH9g0288 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 166 IPR007112 -
HCH9g0288 259 SMART dpbb_1 71 156 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0288 HCH-Chr9:1772104 HCH9g0677 HCH-Chr9:4503623 4.00E-84 dispersed
HCH9g0288 HCH-Chr9:1772104 HCH1g0451 HCH-Chr1:53033480 3.60E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0288 - - - 0.0