Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0300 ATGGGTTATTCTTCATTTTCCTTTTCAGTAATCAAATGGTTCTTTTTTCGTAGACCCAAATCTCCAATTCTCTTATCCAAGCTCTTTATTCTTATCTGTATTATTTCCGTCTTTCAAACTGACGTTATCTTATGCGATTCAGACAAATCGGTTCTTCTTCAGTTTAAAGCTGCTGTCTTGGACCAATCAGGGTTGCTTTCGAGCTGGAATTCAAGTAATTCCAATTACTGCTTATGGTTTGGAGTTTCTTGCGATTCGAAGTCTCGGGTTTTGTCGATTAACATTTCGGGTAGTGGTGGAGCAGGTAATTTGATTGGTTTTTCGTGCTCTGATTTTACCAAATTTCCTCTTTACGGACTTGGAATCAGGAGGAATTGTGGGGGTAATAAAGGGTCATTGTTTGGGAAGGTTCCTACTGTGATTGGAAAGCTTAGTGAGCTTAAGGTTTTGTCTCTTCCGTTTAATGGTTTTGAGGGAGATATTCCTAGTGAAATCTTGGGTTTGGAGAATTTAGAAGTTCTTGATCTGGAGGGAAACTCTATAACCGGGTTGCTTACTGATGGTTTTTCAAGGTTGAGTAAGTTGCGGGTTCTTAATTTGGGATTCAACAGGGTGACTGGTGGGATTCCTCGCTCGTTTTCGGGTTTTGTGAGTTTAGAGATCTTGAATTTAGCTGGGAATCAGTTGAATGGCACAATTCCGCAGTTTGTTGGTCAGTTAAGAGGGGTCTACTTGTCTTTTAATTCTTTTACGGATTCCATTCCGAGTGAGCTGGGGGATAACTGTGGGAAGCTTGAACATCTAGATTTGTCGGGTAATTTCTTGGTCCGTGGAATTCCAAGCAGTTTGGGAAATTGCAGTCAGTTGCAGACACTGTTGTTGTATTCGAATATGCTTGAAGAAGCCATTCCAGTAGAAATTGGCCGGCTTCAGAAGCTAGAAGTGCTTGATCTTTCAAGGAATAGCCTCAGCGGTCCCATACCCTCAGATCTTGGAAATTGCTCGCAGTTATCCGTCCTTGTGCTTTCAAATATATTTGATCCGATTCCGAAAATCAATTACACAAACGTGGAACTAAGTGATGGCAGTTATAATTATTTTTCGGGTGCTATACCTGAGACAGTAGCAACCCTCCCAAAGCTGAGGATATTGTGGGCCCCAAGTGCAAACCTTAACGGTAGATTCCCTACCCAATGGGGTAGTTGTGAAAATCTGGAGATTATCAATTTAGCTCATAATTATCTTTATGGGGATCTTTCTAGTGGGTTTAGCGCCTGCAAAAAGCTACAATTCCTTGATTTAAGCTCAAACCGTCTTTCCGGTGAACTTGATGAAGACCTTCCAGTTCCTTCTATGACTCTGTTTGATATCAGTGATAACCAATTTATAGGTCAGATTCCTATGTACTGTAACGATTCTTGCTCATCCATGTTTCATTCAAGTGGATATACTTCGAATCTCGATGATGTATCATCTCAGTATCTTGCATTTTTTGCCACCAGAACTCGGGGTGCAACCCCTTTTCAATTTCTTGGAGAAGGTGATCTTGTGATAGTTCATAACTTTGGTGACAATAACTTTACGGGCAGTTTTCTATCAATTCCAATTCCACGTGAAAGACTGGGAAAGAAAACTGTTTATGCCTATCTTACTGGTGGAAATAAGTTTACTGGACGATTTCCTGACGGTTTATTTGAGAAATGTGATGAATTGGGGGGACTGATTGTTAATGTTAGCAACAATAAAATATCTGGTCCTATTCCACTCACAATTGGTAAAAGGTGTCGTTCTCTCAAGTTCTTGGATGCATCTGGGAATCAGATGACTGGGCAGGTGCCTGCTACTTTCGGGGAGCTGTTATCTCTGAATCACCTGAACTTAAGTTGGAACAGGTTGCAATTTCAGATACCGACTTCTCTTGGACGGATGGCTGATTTGAGGTATCTTTGTTTGGCTGGTAATAACTTCAATGGTTCCATACCTTCAACTTTCGGACAGCTGCACTCTTTAGAGTTGTTGGATCTTTCCTATAACTCTCTTACTGGAGAAATCCCAAAAGATCTTGTAAACTTGAGAGGCCTAAAAGTTTTGCTGCTCAATAACAATAAGCTCTCTGGACAGGTTCCCCCTGGTTTGGCAAATGTTACCACACTCTCTGCATTTAATGTGTCCTTCAATAACTTGTCTGGTTCCCTGCCATCGAATAACAACATGATCAAATGTAGTGGTGCTCTCGGAAATCCTTACCTACAGCCATGCCATATGTTTTCTTTGACAGTACCATCATCTGAAATGCAAGGTACAATTGGTGACTCAAATAGTGTCGCAGCATCACCATCTGGTGTTCCACCCCCAACAAATGGAAGTGCCAGCTTTAATTCAATTGAGATAGCATCCATTACATCTGCTTCGGCCATTGTTTCTGTTCTCATAGCTTTAATAATCCTATTTTTATATACCCGAAAGTGGAACACAAGGTCTAAAGTTCTTGGATCCATGAGAAAGGAAGTAACCGTTTTTACTGATATTGGGGTATCCCTCACCTTTGAGAATGTGGTGCGTGCCACGAGTAATTTCAATGCAAGCAACTGCATTGGCAGTGGAGGCTTCGGTGCTACTTACAAGGCAGAGATTACGCCTGGAGTGCTAGTGGCAATAAAACGGCTTGCTGTAGGCCGCTTTCAAGGGGTTCAACAGTTCGATGCAGAAATTAAAACTCTAGGAAGACTTCGTCATCCAAATCTGGTGACCTTAATTGGTTATCATGCCAGTGAAACAGAGATGTTCCTGATATATAATTATTTGCCAGGTGGTAATTTGGAAAAGTTTATCCAGGAGAGATCCACAAGGGCTGTTGATTGGAGAATACTTCACAAAATTGCGTTGGACATAGCCCGTGCACTTGCTTACCTTCATGATCAGTGTGTTCCAAGGGTCCTCCATCGTGATGTGAAACCCAGCAATATCTTATTAGATGATGACTTCAATGCTTATCTCTCTGATTTTGGATTGGCCAGGCTTCTTGGCACTTCTGAAACGCATGCCACTACTGGTGTGGCTGGAACTTTTGGTTATGTTGCTCCAGAATACGCCATGACTTGCCGTGTTTCTGATAAAGCCGATGTGTACAGTTATGGCGTCGTGCTTCTTGAGTTACTCTCAGACAAGAAAGCATTAGATCCTTCATTCTCTCCTTATGGTAATGGTTTTAACATTGTTGCATGGGCATGTATGCTTCTTAGGCAGGGCCGCGCCAAGGAATTCTTTACGTCCGGCTTATGGGATATCGGCCCCCATGATGATTTGGTAGAAGTATTGCACTTAGCAGTTGTGTGTACAGTTGACTCCCTATCGACGAGGCCAACGATGAAACAAGTTGTGCGACGGCTTAAGCAGCTTCAACCTCCATCTTGTTAG 3417 42.03 MGYSSFSFSVIKWFFFRRPKSPILLSKLFILICIISVFQTDVILCDSDKSVLLQFKAAVLDQSGLLSSWNSSNSNYCLWFGVSCDSKSRVLSINISGSGGAGNLIGFSCSDFTKFPLYGLGIRRNCGGNKGSLFGKVPTVIGKLSELKVLSLPFNGFEGDIPSEILGLENLEVLDLEGNSITGLLTDGFSRLSKLRVLNLGFNRVTGGIPRSFSGFVSLEILNLAGNQLNGTIPQFVGQLRGVYLSFNSFTDSIPSELGDNCGKLEHLDLSGNFLVRGIPSSLGNCSQLQTLLLYSNMLEEAIPVEIGRLQKLEVLDLSRNSLSGPIPSDLGNCSQLSVLVLSNIFDPIPKINYTNVELSDGSYNYFSGAIPETVATLPKLRILWAPSANLNGRFPTQWGSCENLEIINLAHNYLYGDLSSGFSACKKLQFLDLSSNRLSGELDEDLPVPSMTLFDISDNQFIGQIPMYCNDSCSSMFHSSGYTSNLDDVSSQYLAFFATRTRGATPFQFLGEGDLVIVHNFGDNNFTGSFLSIPIPRERLGKKTVYAYLTGGNKFTGRFPDGLFEKCDELGGLIVNVSNNKISGPIPLTIGKRCRSLKFLDASGNQMTGQVPATFGELLSLNHLNLSWNRLQFQIPTSLGRMADLRYLCLAGNNFNGSIPSTFGQLHSLELLDLSYNSLTGEIPKDLVNLRGLKVLLLNNNKLSGQVPPGLANVTTLSAFNVSFNNLSGSLPSNNNMIKCSGALGNPYLQPCHMFSLTVPSSEMQGTIGDSNSVAASPSGVPPPTNGSASFNSIEIASITSASAIVSVLIALIILFLYTRKWNTRSKVLGSMRKEVTVFTDIGVSLTFENVVRATSNFNASNCIGSGGFGATYKAEITPGVLVAIKRLAVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSPYGNGFNIVAWACMLLRQGRAKEFFTSGLWDIGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1855074 1858490 + evm.model.ptg000007l.300 HCH9g0300 550932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0300 1138 Gene3D Transferase(Phosphotransferase) domain 1 935 1135 - -
HCH9g0300 1138 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
HCH9g0300 1138 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 260 351 - -
HCH9g0300 1138 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 352 443 - -
HCH9g0300 1138 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 935 1137 - -
HCH9g0300 1138 ProSiteProfiles Protein kinase domain profile. 859 1133 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0300 1138 ProSitePatterns Serine/Threonine protein kinases active-site signature. 979 991 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0300 1138 Pfam Leucine Rich Repeat 597 619 IPR001611 GO:0005515(InterPro)
HCH9g0300 1138 Pfam Leucine Rich Repeat 428 447 IPR001611 GO:0005515(InterPro)
HCH9g0300 1138 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515(InterPro)
HCH9g0300 1138 Pfam Leucine Rich Repeat 621 643 IPR001611 GO:0005515(InterPro)
HCH9g0300 1138 Pfam Leucine Rich Repeat 264 286 IPR001611 GO:0005515(InterPro)
HCH9g0300 1138 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515(InterPro)
HCH9g0300 1138 Pfam Leucine rich repeat 646 704 IPR001611 GO:0005515(InterPro)
HCH9g0300 1138 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 515 758 - -
HCH9g0300 1138 Pfam Protein kinase domain 862 1060 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0300 1138 Gene3D Phosphorylase Kinase; domain 1 821 934 - -
HCH9g0300 1138 SMART serkin_6 859 1137 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0300 1138 Gene3D Ribonuclease Inhibitor 351 480 IPR032675 -
HCH9g0300 1138 SUPERFAMILY L domain-like 553 737 - -
HCH9g0300 1138 ProSitePatterns Protein kinases ATP-binding region signature. 865 887 IPR017441 GO:0005524(InterPro)
HCH9g0300 1138 SUPERFAMILY RNI-like 134 468 - -
HCH9g0300 1138 PRINTS Leucine-rich repeat signature 429 442 - -
HCH9g0300 1138 PRINTS Leucine-rich repeat signature 667 680 - -
HCH9g0300 1138 SMART LRR_typ_2 691 714 IPR003591 -
HCH9g0300 1138 SMART LRR_typ_2 168 191 IPR003591 -
HCH9g0300 1138 SMART LRR_typ_2 310 334 IPR003591 -
HCH9g0300 1138 SMART LRR_typ_2 192 215 IPR003591 -
HCH9g0300 1138 SMART LRR_typ_2 619 643 IPR003591 -
HCH9g0300 1138 SMART LRR_typ_2 667 690 IPR003591 -
HCH9g0300 1138 SMART LRR_typ_2 216 240 IPR003591 -
HCH9g0300 1138 SMART LRR_typ_2 262 286 IPR003591 -
HCH9g0300 1138 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 244 1133 IPR050647 -
HCH9g0300 1138 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 823 934 - -
HCH9g0300 1138 Gene3D Ribonuclease Inhibitor 45 239 IPR032675 -
HCH9g0300 1138 Gene3D Ribonuclease Inhibitor 240 350 IPR032675 -
HCH9g0300 1138 Gene3D Ribonuclease Inhibitor 481 774 IPR032675 -
HCH9g0300 1138 SUPERFAMILY Protein kinase-like (PK-like) 844 1130 IPR011009 -
HCH9g0300 1138 CDD STKc_IRAK 865 1133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1115 HCH-Chr10:40080534 HCH9g0300 HCH-Chr9:1855074 3.10E-143 dispersed
HCH9g0300 HCH-Chr9:1855074 HCH1g0825 HCH-Chr1:56890772 2.20E-62 dispersed
HCH9g0300 HCH-Chr9:1855074 HCH6g0442 HCH-Chr6:12270439 1.00E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81747 PF00069 Pkinase 4.50E-43 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0300 - - - 0.0