Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0307 ATGATTACAAATTCAACAGAAGAGAGCAAATTCCCATCATCAAAGCTGGAAGGAAGTAGTCCAACTGATGACAAAACTAACAAGGGTTCATCAAGCTCATCGACGCCATGGCTTAGGTTGAAGGATCCAAGGATCGTTCGCGTTTCTCGAGCTTTCGGAGGAAAAGATCGGCACAGCAAAGTGTGTACTATACGAGGCTTGCGTGATAGGCGTGTTAGACTTTCGGTTCCCACTGCAATTCAATTGTATGATCTTCAAGATAGGCTTGGGCTTAACCAGCCTAGCAAAGTTGTTGACTGGCTGCTCAATATAGCTAAGGATGAAATCGATGAGCTCCCTCCATTGCCAATTCCACCTGGAAGCCTTGGCCTAAATTACCAATCTATCTTATCTCATAATTCCCATGAATCAGCTCCTGCTCCTCCTCATCAAACTAATGAATTCAAAAGCAACAACAACAATGTTGTTGATTGGGAAAATCCTGGTCATGAATCAAGCAGATCATTAAAGTTTCCCAATTCAGATGCTTTTCTGAGGTCCAAAGCTAAAGAAGATTGGACAGAAAGAACCAGTGAAGACCAAGAAAAAAGAGCTCTGATGAATAATGTCTCATCATTTGGTTACCAATGGGAGCCAACAAATTTAAACCTTCCTTCATCTCATCATATTGGAAGCCATGGATTCATTACATCTCAAGCAGAAGATCTCCACAGCTTCAATAATGTCATGTCTTTGCCATCTCCTTTGTCTCTCTCAACTGGATCTCAGATTTTTCTTTGCCCACCAGGATTAACACAGTCTTTAGAGATTGATCCAAGACAAGCCAATCACTTACAGATGTTAAGCTCAAATTCCCAAAACTTCCAACTTCATAATTCTCTTACCCCTTCCCTACAATCAATAAACCAATTATCCATGAGACCTTTTCATTTTAGCATGGCTCCCAAATTTGTTTCCCAAGAAAAGAATAATGGAGATGATGATCAAGATCAACCAGATTAA 1002 40.42 MITNSTEESKFPSSKLEGSSPTDDKTNKGSSSSSTPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNIAKDEIDELPPLPIPPGSLGLNYQSILSHNSHESAPAPPHQTNEFKSNNNNVVDWENPGHESSRSLKFPNSDAFLRSKAKEDWTERTSEDQEKRALMNNVSSFGYQWEPTNLNLPSSHHIGSHGFITSQAEDLHSFNNVMSLPSPLSLSTGSQIFLCPPGLTQSLEIDPRQANHLQMLSSNSQNFQLHNSLTPSLQSINQLSMRPFHFSMAPKFVSQEKNNGDDDQDQPD 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1900802 1901890 + evm.model.ptg000007l.307 HCH9g0307 550939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0307 333 MobiDBLite consensus disorder prediction 133 153 - -
HCH9g0307 333 MobiDBLite consensus disorder prediction 1 37 - -
HCH9g0307 333 ProSiteProfiles TCP domain profile. 54 112 IPR017887 -
HCH9g0307 333 Pfam TCP family transcription factor 54 196 IPR017887 -
HCH9g0307 333 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 294 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1081 HCH-Chr14:37808671 HCH9g0307 HCH-Chr9:1900802 1.30E-23 dispersed
HCH3g0159 HCH-Chr3:1032514 HCH9g0307 HCH-Chr9:1900802 4.20E-12 dispersed
HCH3g0820 HCH-Chr3:6148446 HCH9g0307 HCH-Chr9:1900802 3.70E-22 dispersed
HCH6g0648 HCH-Chr6:38603855 HCH9g0307 HCH-Chr9:1900802 3.30E-19 dispersed
HCH8g1193 HCH-Chr8:47408786 HCH9g0307 HCH-Chr9:1900802 6.40E-11 dispersed
HCH9g0307 HCH-Chr9:1900802 HCH9g0355 HCH-Chr9:2205329 3.40E-11 dispersed
HCH8g1238 HCH-Chr8:47724841 HCH9g0307 HCH-Chr9:1900802 6.30E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34126 PF03634 TCP 3.10E-29 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0307 - - - 0.0