Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0307 ATGATTACAAATTCAACAGAAGAGAGCAAATTCCCATCATCAAAGCTGGAAGGAAGTAGTCCAACTGATGACAAAACTAACAAGGGTTCATCAAGCTCATCGACGCCATGGCTTAGGTTGAAGGATCCAAGGATCGTTCGCGTTTCTCGAGCTTTCGGAGGAAAAGATCGGCACAGCAAAGTGTGTACTATACGAGGCTTGCGTGATAGGCGTGTTAGACTTTCGGTTCCCACTGCAATTCAATTGTATGATCTTCAAGATAGGCTTGGGCTTAACCAGCCTAGCAAAGTTGTTGACTGGCTGCTCAATATAGCTAAGGATGAAATCGATGAGCTCCCTCCATTGCCAATTCCACCTGGAAGCCTTGGCCTAAATTACCAATCTATCTTATCTCATAATTCCCATGAATCAGCTCCTGCTCCTCCTCATCAAACTAATGAATTCAAAAGCAACAACAACAATGTTGTTGATTGGGAAAATCCTGGTCATGAATCAAGCAGATCATTAAAGTTTCCCAATTCAGATGCTTTTCTGAGGTCCAAAGCTAAAGAAGATTGGACAGAAAGAACCAGTGAAGACCAAGAAAAAAGAGCTCTGATGAATAATGTCTCATCATTTGGTTACCAATGGGAGCCAACAAATTTAAACCTTCCTTCATCTCATCATATTGGAAGCCATGGATTCATTACATCTCAAGCAGAAGATCTCCACAGCTTCAATAATGTCATGTCTTTGCCATCTCCTTTGTCTCTCTCAACTGGATCTCAGATTTTTCTTTGCCCACCAGGATTAACACAGTCTTTAGAGATTGATCCAAGACAAGCCAATCACTTACAGATGTTAAGCTCAAATTCCCAAAACTTCCAACTTCATAATTCTCTTACCCCTTCCCTACAATCAATAAACCAATTATCCATGAGACCTTTTCATTTTAGCATGGCTCCCAAATTTGTTTCCCAAGAAAAGAATAATGGAGATGATGATCAAGATCAACCAGATTAA 1002 40.42 MITNSTEESKFPSSKLEGSSPTDDKTNKGSSSSSTPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNIAKDEIDELPPLPIPPGSLGLNYQSILSHNSHESAPAPPHQTNEFKSNNNNVVDWENPGHESSRSLKFPNSDAFLRSKAKEDWTERTSEDQEKRALMNNVSSFGYQWEPTNLNLPSSHHIGSHGFITSQAEDLHSFNNVMSLPSPLSLSTGSQIFLCPPGLTQSLEIDPRQANHLQMLSSNSQNFQLHNSLTPSLQSINQLSMRPFHFSMAPKFVSQEKNNGDDDQDQPD 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1900802 1901890 + evm.model.ptg000007l.307 HCH9g0307 550939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0307 333 MobiDBLite consensus disorder prediction 133 153 - -
HCH9g0307 333 MobiDBLite consensus disorder prediction 1 37 - -
HCH9g0307 333 ProSiteProfiles TCP domain profile. 54 112 IPR017887 -
HCH9g0307 333 Pfam TCP family transcription factor 54 196 IPR017887 -
HCH9g0307 333 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 294 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0307 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1081 HCH-Chr14:37808671 HCH9g0307 HCH-Chr9:1900802 1.30E-23 dispersed
HCH3g0159 HCH-Chr3:1032514 HCH9g0307 HCH-Chr9:1900802 4.20E-12 dispersed
HCH3g0820 HCH-Chr3:6148446 HCH9g0307 HCH-Chr9:1900802 3.70E-22 dispersed
HCH6g0648 HCH-Chr6:38603855 HCH9g0307 HCH-Chr9:1900802 3.30E-19 dispersed
HCH8g1193 HCH-Chr8:47408786 HCH9g0307 HCH-Chr9:1900802 6.40E-11 dispersed
HCH9g0307 HCH-Chr9:1900802 HCH9g0355 HCH-Chr9:2205329 3.40E-11 dispersed
HCH8g1238 HCH-Chr8:47724841 HCH9g0307 HCH-Chr9:1900802 6.30E-35 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0544 . 28 238 TCP Transcription Factor Family AT5G23280 57.8 2.0e-56 216.1
HCH10g1153 . 22 252 TCP Transcription Factor Family AT5G23280 54.5 2.4e-54 209.1
HCH13g1174 . 64 332 TCP Transcription Factor Family AT2G45680 55.0 3.5e-62 235.7
HCH1g0935 . 76 180 TCP Transcription Factor Family AT3G47620 85.0 1.9e-42 170.6
HCH3g0046 . 52 161 TCP Transcription Factor Family AT3G47620 79.3 1.9e-39 160.6
HCH1g1177 . 127 209 TCP Transcription Factor Family AT3G47620 89.2 2.6e-36 150.2
HCH9g0048 . 1 307 TCP Transcription Factor Family AT3G27010 56.5 1.9e-67 253.1
HCH1g0544 . 25 236 TCP Transcription Factor Family AT5G08330 60.9 3.3e-56 215.3
HCH10g1153 . 1 251 TCP Transcription Factor Family AT5G08330 51.9 2.1e-55 212.6
HCH8g1238 . 33 227 TCP Transcription Factor Family AT5G60970 51.3 2.5e-44 176.4
HCH9g0307 . 31 131 TCP Transcription Factor Family AT3G02150 75.7 2.0e-38 156.8
HCH6g0648 . 21 224 TCP Transcription Factor Family AT2G31070 51.4 1.7e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34126 PF03634 TCP 3.10E-29 No_clan HCH TF