Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0320 ATGGCTTTTTTCTTCTCACCCATTTCTCAATTTGCCTCAATGTTTACATTTTTCGCCATTTTTCTTTCCTTCTTCTCTTTTTTTACTTCAACAGAGGCTTATGATGCACTTGATCCAAATGGAAACATTACTATCAAATGGGATGTTATAAACTGGAATCCTGATGGCTATATTGCTGTTGTTACCATGTATAATTTCCAACAATATCGTCACATTCCAGTGCCGGGATGGTCTCTGGGATGGACATGGGCAAAGAAAGAGGTCATATGGAGCATGCTGGGAGGCCAAGCAACGGAGCAAGGTGATTGTTCAAGATATAAAGGGACCATCCCTCACTGCTGCAAGAAGGATCCAACGGTCGTTGATCTAATGCCCGGAACTCCTTATAACCAGCAAATTGCAAATTGCTGCAAAGGTGGAGTTCTCAAGTCCTGGGTGCAAGATCCAGCTACTGCAGTGAGCTCATTTCAGCTCAGTGTTGGTGCAGCTGGTACCTCAAATAAAACTGTCAGACTGCCTAAGAACTTTACCTTGAAAGCACCGGGTCCCGGTTACACTTGTGGACCTGCAAAAATTGTTAAACCTAGCAAATTCTCTTCTGCAGACAAACGGAGAGTTACCCAAGCTTTGATGACTTGGAATGTTACGTGCACATATTCACAGTTTCTGGCGCAAAAAACTCCGACCTGCTGTGTCTCGCTGTCAGCGTTTTACAATGACACAATTGTTTCCTGCCCAAAATGCTCTTGTGGCTGCCAAAGCAACATGACACAGCCTGGAGGTTGTGTGGAGGCGAATTCTCCGTATTTAGCATCCGTTGTTACTGGTTCTAGCAAGAATAACTTAGTGCCTCTAGTTCAGTGTACTAGCCATATGTGCCCAATCCGAGTTCACTGGCATGTGAAGCTCAACTATAAGGAGTATTGGCGTGTGAAGATCACGATTACTAACTTCAATTACAGGATGAACTATTCTAATTGGAATTTAGTTGCCCAACATCCTAACTTCGACAATCTAACGCAGATTTTCAGCTTCAACTACAAGTCAATCAATCCATATGGAACAATAAATGATACTGCCGTGCTGTGGGGCGTTCAGTTCTACAACGATTTGCTTATGCAGGCGGGCCGTCTTGGTAATGTGCAAACAGAGCTACTTTTTCGGAAGGATCAATCAACTTTCACATTTGACAAGGGTTGGGCTTTCCCAAGAAGGATCTATTTCAATGGCGACAACTGTGTCATGCCACCTCCGGATGCCTATCCATGGTCACCGAACACGGGTTCCAGGCGAAGCATCCCGTTGTTTATTGCTCTATTGTTGACTCTCTTATCCTTTCACCATTCTTTTGCCTAG 1356 44.03 MAFFFSPISQFASMFTFFAIFLSFFSFFTSTEAYDALDPNGNITIKWDVINWNPDGYIAVVTMYNFQQYRHIPVPGWSLGWTWAKKEVIWSMLGGQATEQGDCSRYKGTIPHCCKKDPTVVDLMPGTPYNQQIANCCKGGVLKSWVQDPATAVSSFQLSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPSKFSSADKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSAFYNDTIVSCPKCSCGCQSNMTQPGGCVEANSPYLASVVTGSSKNNLVPLVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYRMNYSNWNLVAQHPNFDNLTQIFSFNYKSINPYGTINDTAVLWGVQFYNDLLMQAGRLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWSPNTGSRRSIPLFIALLLTLLSFHHSFA 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2011021 2013623 + evm.model.ptg000007l.320 HCH9g0320 550952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0320 451 PIRSF COBRA 6 450 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
HCH9g0320 451 PANTHER PROTEIN COBRA 19 442 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
HCH9g0320 451 Pfam COBRA-like protein 57 220 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0773 HCH-Chr6:42505597 HCH9g0320 HCH-Chr9:2011021 2.50E-29 dispersed
HCH7g1047 HCH-Chr7:42430939 HCH9g0320 HCH-Chr9:2011021 3.80E-38 dispersed
HCH8g1231 HCH-Chr8:47672489 HCH9g0320 HCH-Chr9:2011021 3.80E-215 dispersed
HCH8g1232 HCH-Chr8:47677733 HCH9g0320 HCH-Chr9:2011021 2.10E-97 dispersed
HCH11g0834 HCH-Chr11:39128616 HCH9g0320 HCH-Chr9:2011021 2.10E-136 transposed
HCH7g0495 HCH-Chr7:3730450 HCH9g0320 HCH-Chr9:2011021 2.00E-115 transposed
HCH3g0128 HCH-Chr3:820126 HCH9g0320 HCH-Chr9:2011021 1.00E-204 wgd
HCH8g1230 HCH-Chr8:47669485 HCH9g0320 HCH-Chr9:2011021 1.10E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0320 - - - 0.0