Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0326 ATGGGGAGAGGAAGAGTGGAGTTGAAGAGGATAGAAAATAAGATAAACAGGCAGGTTACATTTGCTAAGAGAAGAAATGGACTTCTCAAGAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATTATTTTCTCTAACCGTGGCAAGCTCTATGAGTTCTGCAGCACTTCTAACATGCTGAAAACGCTTGAAAGGTATCAAAAGTGCAGTTATGGAGCGGTGGAAGTTGCCAAACCAGCAAAAGAGCTCGAGAGTAGCTATAGAGAATACTTGAAACTGAAGGGGAGGTTTGAGTCTCTTCAACGAACTCAAAGGAATCTTCTTGGTGAGGACTTGGGTCCATTGAACTCCAAGGAGCTTGAGCAGTTGGAGCGTCAACTTGAGTCTTCTTTGAAGCTAGTTAGGTCCACTAAAACACAGTACATGCTAGACCAGCTCTCTGACCTTCAGAACAAGGAACAAATGTTGATAGAAACCAACAGGGCTTTGTCAATTAAGCTGGAAGAAATCAGTTCAAGAAACAGTCTCAGGCTTACATGGGAAGGTGCTGACCAAAGCATGTCTTATGGTCCACAAAATGCTCAAACTCAGGGATTCTTCCAGCCTCTAGATTGCAATCCCACTTTGCAAATTGGGTACACTGCTGCAGTATCAGACCAGATAACAGCAACATCTGCCACAACTCATGCTCAACAAGTCAATTGCTTCCTTCCTGGTTGGATGCTTTGA 741 43.32 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVAKPAKELESSYREYLKLKGRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKLVRSTKTQYMLDQLSDLQNKEQMLIETNRALSIKLEEISSRNSLRLTWEGADQSMSYGPQNAQTQGFFQPLDCNPTLQIGYTAAVSDQITATSATTHAQQVNCFLPGWML 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2032118 2036589 + evm.model.ptg000007l.326 HCH9g0326 550958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0326 246 Coils Coil 124 144 - -
HCH9g0326 246 FunFam MADS-box transcription factor 1 13 86 - -
HCH9g0326 246 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0326 246 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0326 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0326 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0326 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0326 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH9g0326 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0326 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0326 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH9g0326 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH9g0326 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0326 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0326 246 Pfam K-box region 84 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0083 HCH-Chr10:771994 HCH9g0326 HCH-Chr9:2032118 8.60E-81 dispersed
HCH13g1177 HCH-Chr13:38413132 HCH9g0326 HCH-Chr9:2032118 7.70E-53 dispersed
HCH13g1377 HCH-Chr13:41684183 HCH9g0326 HCH-Chr9:2032118 9.10E-12 dispersed
HCH4g0160 HCH-Chr4:909457 HCH9g0326 HCH-Chr9:2032118 3.40E-56 dispersed
HCH9g0326 HCH-Chr9:2032118 HCH9g1054 HCH-Chr9:8947294 3.80E-28 dispersed
HCH9g0326 HCH-Chr9:2032118 HCH9g0327 HCH-Chr9:2041713 4.70E-42 tandem
HCH3g0132 HCH-Chr3:843746 HCH9g0326 HCH-Chr9:2032118 8.30E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34127 PF01486 K-box 4.40E-26 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0326 K09264 - csv:101208204 449.899