Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0327 ATGGGGAGAGGAAGAGTTCAGCTAAAGAGGATCGAGAACAAGATCAGTAGGCAAGTAACTTTTTCAAAGCGTCGTAGTGGATTGCTTAAGAAAGCTCATGAGATCTCTGTTCTATGTGATGCTGATGTTGCTTTGATTGTTTTCTCCACTAAAGGGAAGCTCTTTGAGTATTCTACTGATTCCAGCATGGATAAGATTTTAGAACGATATGAGCGATATTCCTACGCAGATCAGAGACAATCTCTTACAAATCTTGAATCTGAAGCACAGGTAAATTGGTTTCAGGAGTACCCCAAACTTGCATCCAGATTGGAGATCATACGGAAGAACTTGAGGAACTATTTAGGAGAAGATCTTAATCCTTTGAGTTTGAGAGAACTTCAGAGCTTAGAACAACAACTTGATACATCCCTCAAGCGCATAAGAACCAGAAAGAACCAACTCATCCATGAATCTATTTCATTGTTGCATAAGAAGGAAAAGGAATTGCAGGAGGAAAATAGGCTCTTAGCAAACAAGCTAAAAGAGAATGAAAAGTTTATGGTCGAGCATGGGCAATGGGAGCAGCAAAACTTAACTCAAAACCAATCCATTTTTATGATCCCACCTCCTTCCTCACACTCACTTCCTTCTTCTTTGACTATTGGAGGATCTGGTGATCATGAAGGTAGAAGAAGCTGTAACATCCAAATACCAGCATGGATGCTTGGCCATGTGAATGAGAAGCCACAGAACTAA 738 40.24 MGRGRVQLKRIENKISRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTKGKLFEYSTDSSMDKILERYERYSYADQRQSLTNLESEAQVNWFQEYPKLASRLEIIRKNLRNYLGEDLNPLSLRELQSLEQQLDTSLKRIRTRKNQLIHESISLLHKKEKELQEENRLLANKLKENEKFMVEHGQWEQQNLTQNQSIFMIPPPSSHSLPSSLTIGGSGDHEGRRSCNIQIPAWMLGHVNEKPQN 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2041713 2045967 + evm.model.ptg000007l.327 HCH9g0327 550959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0327 245 Coils Coil 153 176 - -
HCH9g0327 245 FunFam MADS-box transcription factor MADS-MC 13 86 - -
HCH9g0327 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0327 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0327 245 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH9g0327 245 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH9g0327 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0327 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0327 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0327 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0327 245 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0327 245 Pfam K-box region 86 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH9g0327 245 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0327 245 Coils Coil 127 147 - -
HCH9g0327 245 Gene3D - 13 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g0327 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 192 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0447 HCH-Chr14:33491842 HCH9g0327 HCH-Chr9:2041713 9.80E-26 dispersed
HCH14g1023 HCH-Chr14:37434694 HCH9g0327 HCH-Chr9:2041713 1.30E-36 dispersed
HCH14g1163 HCH-Chr14:38453405 HCH9g0327 HCH-Chr9:2041713 3.50E-33 dispersed
HCH3g0133 HCH-Chr3:862544 HCH9g0327 HCH-Chr9:2041713 6.40E-68 dispersed
HCH3g0454 HCH-Chr3:2878345 HCH9g0327 HCH-Chr9:2041713 4.30E-33 dispersed
HCH3g0743 HCH-Chr3:5370503 HCH9g0327 HCH-Chr9:2041713 1.40E-36 dispersed
HCH4g0161 HCH-Chr4:923498 HCH9g0327 HCH-Chr9:2041713 1.80E-59 dispersed
HCH7g1576 HCH-Chr7:48136186 HCH9g0327 HCH-Chr9:2041713 5.40E-32 dispersed
HCH9g0327 HCH-Chr9:2041713 HCH9g1054 HCH-Chr9:8947294 1.40E-22 dispersed
HCH9g0326 HCH-Chr9:2032118 HCH9g0327 HCH-Chr9:2041713 4.70E-42 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34128 PF01486 K-box 4.70E-26 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0327 K09264 - csv:101218674 314.694