Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0329 ATGGGTGCTGTTTGCTGCTGTTTGAATGATGAGAATTTTGAAGACACCTGCCTTAGTTTCTTTGTCCAAAACTTGGTCACCTTGTATTTGTCGCTATTCCGAAGGGGGGAAGTGCCTTCTATCTCTTCATCCCTTCAGGGGACGGCGTCGCGTGACAATTCTTTTTCTGATATATATCAATCCCCTCCAAGACCTTTGCCTTATGATGCTGACACCAGATACATCCGCTTGCAACGAGATGGACTAGTTTCTAGGCGTGAGAAGGGTTCTAGTCATTTACAGGAGGACTCGGAACCTTTAAGAAGTAGCATTGAATCTGATCCTGAATGTTTGAGTGCAGTAGACAAGTGGGATGAATCTACTTGTGAAGATGAATCAAATGAACACCTCTACAAGTCTTCATTCAAGCAATCTTCAAAGAAGTCAACTGGAGTTGGTCAATTATACACATCATCAGAAGAGGAAGATATCTGTCCAACATGCCTTGAAGAATATACTCCTGAAAATCCGAAGGTGATGACCAAATGCTCTCACCATTTTCACCTTGGATGTATCTATGAATGGATGGAGAGGAGTGAAAGTTGTCCAGTTTGTGGCAAGGAAATGGAATTTGATGAAACAACATGA 627 42.11 MGAVCCCLNDENFEDTCLSFFVQNLVTLYLSLFRRGEVPSISSSLQGTASRDNSFSDIYQSPPRPLPYDADTRYIRLQRDGLVSRREKGSSHLQEDSEPLRSSIESDPECLSAVDKWDESTCEDESNEHLYKSSFKQSSKKSTGVGQLYTSSEEEDICPTCLEEYTPENPKVMTKCSHHFHLGCIYEWMERSESCPVCGKEMEFDETT 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2050335 2051935 - evm.model.ptg000007l.329 HCH9g0329 550961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0329 208 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 5 204 - GO:0004842(PANTHER)
HCH9g0329 208 MobiDBLite consensus disorder prediction 42 66 - -
HCH9g0329 208 SUPERFAMILY RING/U-box 153 204 - -
HCH9g0329 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 207 IPR013083 -
HCH9g0329 208 Pfam Ring finger domain 157 198 IPR001841 -
HCH9g0329 208 SMART ring_2 158 198 IPR001841 -
HCH9g0329 208 MobiDBLite consensus disorder prediction 83 103 - -
HCH9g0329 208 MobiDBLite consensus disorder prediction 42 60 - -
HCH9g0329 208 CDD RING-H2_AIRP1-like 154 202 - -
HCH9g0329 208 ProSiteProfiles Zinc finger RING-type profile. 158 198 IPR001841 -
HCH9g0329 208 FunFam E3 ubiquitin-protein ligase At3g02290-like 135 205 - -
HCH9g0329 208 MobiDBLite consensus disorder prediction 83 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0526 HCH-Chr5:3600598 HCH9g0329 HCH-Chr9:2050335 8.00E-19 dispersed
HCH7g1635 HCH-Chr7:48514007 HCH9g0329 HCH-Chr9:2050335 6.60E-20 dispersed
HCH9g0329 HCH-Chr9:2050335 HCH10g0285 HCH-Chr10:2367121 9.20E-07 dispersed
HCH13g0661 HCH-Chr13:5257869 HCH9g0329 HCH-Chr9:2050335 1.50E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0329 - - - 0.0