Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0339 ATGGTTCAAGCATCAGGGCAATCCAAATTACGATGGGGGGAGCTAGACGATGACGATGGCGATCTCGATTTTCTCCTCCCACCGAAACAAATCATCGGTCCAGACGCTAACGGATTGAAGAAAATCATTGAATATCAATTCAACGAAGATGGAAATAAAGTCAAAATCACGACCACCACGCGCACTCGTAAACTGGCTAATGCCCGATTGAGTAAACGCGCCGTCGAGCGTCGATCTTGGCCTAAATTCGGCGATGCTGTTCATGAAGATGTCGGCAGTAGGCTTACTATGGTTTCCACTGAGGAGATTCTCTTGGAGCGCCCTCGCCCTCCTGGGAGCAAAGCAGAAGAGGTTAAAGTTGCAGGAGATCCTTTAGCTCAACTTGGAAAAGGTGGTGCTGTTCTTATGGTCTGTCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGTCCTTACAAAGATCTGGCACCGCAAGCTGATGGTACCGATAAGAGTGTTGCACCAGATGCGACGACTGCTGCTACCAGCACTACTAAGGGAGCATATGTGCCTCCGGGTATGAGAGCCGGGGCAGAGAGGACAGTTACTGACATGAGACGTAGAAATGATGAAAATTCGGTTCGTGTCACCAATCTTTCAGAAGACACAAGAGAGCCTGACCTGCTTGAGCTTTTCCGACCTTTCGGTGCTGTTAGCAGAGTTTATGTCGCTGTTGATCAAAAGACTGGCATGAGTAGAGGATTTGGTTTTGTGAACTTTGTGAACCGCGACGAGGCTCAGAGAGCAATTAATAAGCTGAATGGATATGGTTATGATAGTCTCATCCTTAGAGTCGAGTGGGCGACTCCAAGGGCGACTTAA 867 48.33 MVQASGQSKLRWGELDDDDGDLDFLLPPKQIIGPDANGLKKIIEYQFNEDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPRPPGSKAEEVKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQADGTDKSVAPDATTAATSTTKGAYVPPGMRAGAERTVTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNRDEAQRAINKLNGYGYDSLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2103910 2105679 + evm.model.ptg000007l.339 HCH9g0339 550971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0339 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 283 - -
HCH9g0339 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
HCH9g0339 288 SMART rrm1_1 208 281 IPR000504 GO:0003723(InterPro)
HCH9g0339 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
HCH9g0339 288 FunFam Eukaryotic translation initiation factor 3 subunit G 172 288 - -
HCH9g0339 288 SUPERFAMILY RNA-binding domain, RBD 204 286 IPR035979 GO:0003676(InterPro)
HCH9g0339 288 CDD eIF3G 37 156 IPR024675 -
HCH9g0339 288 Pfam RNA recognition motif 209 275 IPR000504 GO:0003723(InterPro)
HCH9g0339 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723(InterPro)
HCH9g0339 288 Gene3D - 160 288 IPR012677 -
HCH9g0339 288 Pfam Eukaryotic translation initiation factor 3 subunit G 32 157 IPR024675 -
HCH9g0339 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
HCH9g0339 288 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0997 HCH-Chr6:44722518 HCH9g0339 HCH-Chr9:2103910 2.60E-161 dispersed
HCH7g0538 HCH-Chr7:4132527 HCH9g0339 HCH-Chr9:2103910 1.10E-06 dispersed
HCH9g0339 HCH-Chr9:2103910 HCH11g0487 HCH-Chr11:5714434 8.30E-06 dispersed
HCH9g0339 HCH-Chr9:2103910 HCH11g0348 HCH-Chr11:3298268 1.60E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0339 K03248 - csv:101207022 513.842