Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0345 ATGTTAAAGACTGAAGATGATTGCGGCGGAGACAGCGGCGGCGGCGGTAATTGCTGGACACGTGTTTGCGATACGTGCAAGGCGGCGGAGTGCACCGTGTACTGCCGTGCTGACGCGGCGTATCTTTGCAATGGCTGTGATGTCCGAATCCACTTGGCTTCACGACATGAACGTGTGCGGGTTTGCGAGGCTTGTGAGCGAGCTCCAGCCGCGTTCATCTGCAAGGCTGATGCTGCCTCGCTTTGTGTCAATTGCGATGCCGACATTCACTCCGCTAACCCCCTCGCTCGTCGCCACCACCGTGTACCCGTCGTGCCGATATCCAGCTGCGTTTACGGCACCTTGGCTACTGCTGTGGCAGAGGATGACTTTTTTGGTCAAGAAGAAGAAATTGAAAAGAGTGACGAAGATGAAGCTGCGTCGTGGCTGTTGTTGAACCCGGAAAAGGGCAACAAAATTCCGAATAATGACGATGACGATAACGACAACCAGAATCATAGTAATGGGTTCTTATTTGGTGGGGAAGTGGATGAATATTTGAATTTTGTGGAATTCAATTCATGCGGCGAGAATCATGAGTTTAGTGAACAATACAGCCACCAGCAACACTACAACAACGGTTTGCCGTCTGCGGCAACAGCGAACAAGAATTATGGAGGCGGCAGCGATAGCGTTGTGCCGGTTCAATTGCAGCAACAGAATTATCAAATTGGTTCAGGGTTTAGTTTTAATGGCTTCATTAGTCACAATGCTTCAATTTCATCAATGGAAGTTGGAGTAGTACCAGAGTCATCAATGAGCGACATGTCGATATCGAACGCGAGGCCTCCGAAAGGGACGATAGATCTCTTCTCGGGCGCTCCGGTTCAAATGCCGGTGACCCAATTAACTCCAATGGACAGAGAAGCAAGAGTTCTCCGGTACAGAGAGAAGAAGAAGACGAGGAAGTTTGAGAAAACAATCAGATACGCTTCAAGAAAAGCTTATGCAGAGACCAGACCAAGAATCAAGGGTAGATTTGCTAAGAGAGATGATGCGGATCAGAAATTCTCAAACTCATTAATGGTGGAAAATGGATATGGAATTGTCCCTTCCTTTTGA 1101 48.32 MLKTEDDCGGDSGGGGNCWTRVCDTCKAAECTVYCRADAAYLCNGCDVRIHLASRHERVRVCEACERAPAAFICKADAASLCVNCDADIHSANPLARRHHRVPVVPISSCVYGTLATAVAEDDFFGQEEEIEKSDEDEAASWLLLNPEKGNKIPNNDDDDNDNQNHSNGFLFGGEVDEYLNFVEFNSCGENHEFSEQYSHQQHYNNGLPSAATANKNYGGGSDSVVPVQLQQQNYQIGSGFSFNGFISHNASISSMEVGVVPESSMSDMSISNARPPKGTIDLFSGAPVQMPVTQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRDDADQKFSNSLMVENGYGIVPSF 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2144707 2145935 - evm.model.ptg000007l.345 HCH9g0345 550977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0345 366 Pfam CCT motif 301 343 IPR010402 GO:0005515(InterPro)
HCH9g0345 366 CDD Bbox1_BBX-like 22 61 IPR049808 -
HCH9g0345 366 CDD Bbox1_BBX-like 61 104 IPR049808 -
HCH9g0345 366 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 17 353 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
HCH9g0345 366 SMART bboxneu5 62 104 IPR000315 GO:0008270(InterPro)
HCH9g0345 366 SMART bboxneu5 20 61 IPR000315 GO:0008270(InterPro)
HCH9g0345 366 ProSiteProfiles Zinc finger B-box type profile. 57 104 IPR000315 GO:0008270(InterPro)
HCH9g0345 366 ProSiteProfiles CCT domain profile. 301 343 IPR010402 GO:0005515(InterPro)
HCH9g0345 366 Pfam B-box zinc finger 58 104 IPR000315 GO:0008270(InterPro)
HCH9g0345 366 MobiDBLite consensus disorder prediction 147 168 - -
HCH9g0345 366 ProSiteProfiles Zinc finger B-box type profile. 22 61 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0345 K12135 - - vvi:100248114 449.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0488 HCH-Chr4:3176046 HCH9g0345 HCH-Chr9:2144707 8.30E-37 dispersed
HCH5g1176 HCH-Chr5:40118108 HCH9g0345 HCH-Chr9:2144707 7.40E-07 dispersed
HCH6g1467 HCH-Chr6:48336296 HCH9g0345 HCH-Chr9:2144707 4.00E-06 dispersed
HCH7g0361 HCH-Chr7:2602156 HCH9g0345 HCH-Chr9:2144707 1.80E-09 dispersed
HCH9g0345 HCH-Chr9:2144707 HCH8g1173 HCH-Chr8:47295179 1.50E-07 dispersed
HCH9g0345 HCH-Chr9:2144707 HCH8g1002 HCH-Chr8:46108337 6.30E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH9g0345 . 19 366 C2C2-CO-like Transcription Factor Family AT5G15850 50.3 1.2e-57 220.7
HCH4g0488 . 1 346 C2C2-CO-like Transcription Factor Family AT5G24930 60.5 3.1e-82 302.4
HCH8g1002 . 20 370 C2C2-CO-like Transcription Factor Family AT5G24930 51.2 6.4e-56 214.9
HCH8g1002 . 1 370 C2C2-CO-like Transcription Factor Family AT5G57660 51.6 2.1e-67 253.1
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 55.4 8.6e-88 320.9
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 52.8 1.8e-82 303.1
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 6.2e-86 314.7
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 52.8 2.9e-83 305.8
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 6.2e-86 314.7
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 52.8 2.9e-83 305.8
HCH7g0529 . 1 204 C2C2-CO-like Transcription Factor Family AT1G75540 54.6 5.2e-52 201.8
HCH12g0156 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 50.9 2.6e-51 199.5
HCH13g1365 . 1 183 C2C2-CO-like Transcription Factor Family AT2G21320 60.1 3.4e-55 211.5
HCH14g0629 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 54.3 6.9e-48 187.2
HCH13g1365 . 1 184 C2C2-CO-like Transcription Factor Family AT4G38960 62.5 3.3e-56 214.9
HCH14g0629 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 56.8 2.4e-51 198.7
HCH7g0529 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 58.1 2.1e-55 212.6
HCH4g0768 . 1 210 C2C2-CO-like Transcription Factor Family AT4G39070 51.9 1.8e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009273 0 1 0 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34131 PF00643 zf-B_box 6.70E-07 No_clan HCH TF