Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0345 ATGTTAAAGACTGAAGATGATTGCGGCGGAGACAGCGGCGGCGGCGGTAATTGCTGGACACGTGTTTGCGATACGTGCAAGGCGGCGGAGTGCACCGTGTACTGCCGTGCTGACGCGGCGTATCTTTGCAATGGCTGTGATGTCCGAATCCACTTGGCTTCACGACATGAACGTGTGCGGGTTTGCGAGGCTTGTGAGCGAGCTCCAGCCGCGTTCATCTGCAAGGCTGATGCTGCCTCGCTTTGTGTCAATTGCGATGCCGACATTCACTCCGCTAACCCCCTCGCTCGTCGCCACCACCGTGTACCCGTCGTGCCGATATCCAGCTGCGTTTACGGCACCTTGGCTACTGCTGTGGCAGAGGATGACTTTTTTGGTCAAGAAGAAGAAATTGAAAAGAGTGACGAAGATGAAGCTGCGTCGTGGCTGTTGTTGAACCCGGAAAAGGGCAACAAAATTCCGAATAATGACGATGACGATAACGACAACCAGAATCATAGTAATGGGTTCTTATTTGGTGGGGAAGTGGATGAATATTTGAATTTTGTGGAATTCAATTCATGCGGCGAGAATCATGAGTTTAGTGAACAATACAGCCACCAGCAACACTACAACAACGGTTTGCCGTCTGCGGCAACAGCGAACAAGAATTATGGAGGCGGCAGCGATAGCGTTGTGCCGGTTCAATTGCAGCAACAGAATTATCAAATTGGTTCAGGGTTTAGTTTTAATGGCTTCATTAGTCACAATGCTTCAATTTCATCAATGGAAGTTGGAGTAGTACCAGAGTCATCAATGAGCGACATGTCGATATCGAACGCGAGGCCTCCGAAAGGGACGATAGATCTCTTCTCGGGCGCTCCGGTTCAAATGCCGGTGACCCAATTAACTCCAATGGACAGAGAAGCAAGAGTTCTCCGGTACAGAGAGAAGAAGAAGACGAGGAAGTTTGAGAAAACAATCAGATACGCTTCAAGAAAAGCTTATGCAGAGACCAGACCAAGAATCAAGGGTAGATTTGCTAAGAGAGATGATGCGGATCAGAAATTCTCAAACTCATTAATGGTGGAAAATGGATATGGAATTGTCCCTTCCTTTTGA 1101 48.32 MLKTEDDCGGDSGGGGNCWTRVCDTCKAAECTVYCRADAAYLCNGCDVRIHLASRHERVRVCEACERAPAAFICKADAASLCVNCDADIHSANPLARRHHRVPVVPISSCVYGTLATAVAEDDFFGQEEEIEKSDEDEAASWLLLNPEKGNKIPNNDDDDNDNQNHSNGFLFGGEVDEYLNFVEFNSCGENHEFSEQYSHQQHYNNGLPSAATANKNYGGGSDSVVPVQLQQQNYQIGSGFSFNGFISHNASISSMEVGVVPESSMSDMSISNARPPKGTIDLFSGAPVQMPVTQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRDDADQKFSNSLMVENGYGIVPSF 366
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 2144707 2145935 - evm.model.ptg000007l.345 HCH9g0345 550977
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0345 366 Pfam CCT motif 301 343 IPR010402 GO:0005515(InterPro)
HCH9g0345 366 CDD Bbox1_BBX-like 22 61 IPR049808 -
HCH9g0345 366 CDD Bbox1_BBX-like 61 104 IPR049808 -
HCH9g0345 366 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 17 353 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
HCH9g0345 366 SMART bboxneu5 62 104 IPR000315 GO:0008270(InterPro)
HCH9g0345 366 SMART bboxneu5 20 61 IPR000315 GO:0008270(InterPro)
HCH9g0345 366 ProSiteProfiles Zinc finger B-box type profile. 57 104 IPR000315 GO:0008270(InterPro)
HCH9g0345 366 ProSiteProfiles CCT domain profile. 301 343 IPR010402 GO:0005515(InterPro)
HCH9g0345 366 Pfam B-box zinc finger 58 104 IPR000315 GO:0008270(InterPro)
HCH9g0345 366 MobiDBLite consensus disorder prediction 147 168 - -
HCH9g0345 366 ProSiteProfiles Zinc finger B-box type profile. 22 61 IPR000315 GO:0008270(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0488 HCH-Chr4:3176046 HCH9g0345 HCH-Chr9:2144707 8.30E-37 dispersed
HCH5g1176 HCH-Chr5:40118108 HCH9g0345 HCH-Chr9:2144707 7.40E-07 dispersed
HCH6g1467 HCH-Chr6:48336296 HCH9g0345 HCH-Chr9:2144707 4.00E-06 dispersed
HCH7g0361 HCH-Chr7:2602156 HCH9g0345 HCH-Chr9:2144707 1.80E-09 dispersed
HCH9g0345 HCH-Chr9:2144707 HCH8g1173 HCH-Chr8:47295179 1.50E-07 dispersed
HCH9g0345 HCH-Chr9:2144707 HCH8g1002 HCH-Chr8:46108337 6.30E-35 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34131 PF00643 zf-B_box 6.70E-07 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0345 K12135 - vvi:100248114 449.514