Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g0345 | ATGTTAAAGACTGAAGATGATTGCGGCGGAGACAGCGGCGGCGGCGGTAATTGCTGGACACGTGTTTGCGATACGTGCAAGGCGGCGGAGTGCACCGTGTACTGCCGTGCTGACGCGGCGTATCTTTGCAATGGCTGTGATGTCCGAATCCACTTGGCTTCACGACATGAACGTGTGCGGGTTTGCGAGGCTTGTGAGCGAGCTCCAGCCGCGTTCATCTGCAAGGCTGATGCTGCCTCGCTTTGTGTCAATTGCGATGCCGACATTCACTCCGCTAACCCCCTCGCTCGTCGCCACCACCGTGTACCCGTCGTGCCGATATCCAGCTGCGTTTACGGCACCTTGGCTACTGCTGTGGCAGAGGATGACTTTTTTGGTCAAGAAGAAGAAATTGAAAAGAGTGACGAAGATGAAGCTGCGTCGTGGCTGTTGTTGAACCCGGAAAAGGGCAACAAAATTCCGAATAATGACGATGACGATAACGACAACCAGAATCATAGTAATGGGTTCTTATTTGGTGGGGAAGTGGATGAATATTTGAATTTTGTGGAATTCAATTCATGCGGCGAGAATCATGAGTTTAGTGAACAATACAGCCACCAGCAACACTACAACAACGGTTTGCCGTCTGCGGCAACAGCGAACAAGAATTATGGAGGCGGCAGCGATAGCGTTGTGCCGGTTCAATTGCAGCAACAGAATTATCAAATTGGTTCAGGGTTTAGTTTTAATGGCTTCATTAGTCACAATGCTTCAATTTCATCAATGGAAGTTGGAGTAGTACCAGAGTCATCAATGAGCGACATGTCGATATCGAACGCGAGGCCTCCGAAAGGGACGATAGATCTCTTCTCGGGCGCTCCGGTTCAAATGCCGGTGACCCAATTAACTCCAATGGACAGAGAAGCAAGAGTTCTCCGGTACAGAGAGAAGAAGAAGACGAGGAAGTTTGAGAAAACAATCAGATACGCTTCAAGAAAAGCTTATGCAGAGACCAGACCAAGAATCAAGGGTAGATTTGCTAAGAGAGATGATGCGGATCAGAAATTCTCAAACTCATTAATGGTGGAAAATGGATATGGAATTGTCCCTTCCTTTTGA | 1101 | 48.32 | MLKTEDDCGGDSGGGGNCWTRVCDTCKAAECTVYCRADAAYLCNGCDVRIHLASRHERVRVCEACERAPAAFICKADAASLCVNCDADIHSANPLARRHHRVPVVPISSCVYGTLATAVAEDDFFGQEEEIEKSDEDEAASWLLLNPEKGNKIPNNDDDDNDNQNHSNGFLFGGEVDEYLNFVEFNSCGENHEFSEQYSHQQHYNNGLPSAATANKNYGGGSDSVVPVQLQQQNYQIGSGFSFNGFISHNASISSMEVGVVPESSMSDMSISNARPPKGTIDLFSGAPVQMPVTQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRDDADQKFSNSLMVENGYGIVPSF | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2144707 | 2145935 | - | evm.model.ptg000007l.345 | HCH9g0345 | 550977 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g0345 | 366 | Pfam | CCT motif | 301 | 343 | IPR010402 | GO:0005515(InterPro) | |
HCH9g0345 | 366 | CDD | Bbox1_BBX-like | 22 | 61 | IPR049808 | - | |
HCH9g0345 | 366 | CDD | Bbox1_BBX-like | 61 | 104 | IPR049808 | - | |
HCH9g0345 | 366 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 4 | 17 | 353 | IPR045281 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER) | |
HCH9g0345 | 366 | SMART | bboxneu5 | 62 | 104 | IPR000315 | GO:0008270(InterPro) | |
HCH9g0345 | 366 | SMART | bboxneu5 | 20 | 61 | IPR000315 | GO:0008270(InterPro) | |
HCH9g0345 | 366 | ProSiteProfiles | Zinc finger B-box type profile. | 57 | 104 | IPR000315 | GO:0008270(InterPro) | |
HCH9g0345 | 366 | ProSiteProfiles | CCT domain profile. | 301 | 343 | IPR010402 | GO:0005515(InterPro) | |
HCH9g0345 | 366 | Pfam | B-box zinc finger | 58 | 104 | IPR000315 | GO:0008270(InterPro) | |
HCH9g0345 | 366 | MobiDBLite | consensus disorder prediction | 147 | 168 | - | - | |
HCH9g0345 | 366 | ProSiteProfiles | Zinc finger B-box type profile. | 22 | 61 | IPR000315 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0488 | HCH-Chr4:3176046 | HCH9g0345 | HCH-Chr9:2144707 | 8.30E-37 | dispersed | |
HCH5g1176 | HCH-Chr5:40118108 | HCH9g0345 | HCH-Chr9:2144707 | 7.40E-07 | dispersed | |
HCH6g1467 | HCH-Chr6:48336296 | HCH9g0345 | HCH-Chr9:2144707 | 4.00E-06 | dispersed | |
HCH7g0361 | HCH-Chr7:2602156 | HCH9g0345 | HCH-Chr9:2144707 | 1.80E-09 | dispersed | |
HCH9g0345 | HCH-Chr9:2144707 | HCH8g1173 | HCH-Chr8:47295179 | 1.50E-07 | dispersed | |
HCH9g0345 | HCH-Chr9:2144707 | HCH8g1002 | HCH-Chr8:46108337 | 6.30E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34131 | PF00643 | zf-B_box | 6.70E-07 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH9g0345 | K12135 | - | vvi:100248114 | 449.514 |