Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0347 ATGTCGCCTGTTGATTCTTCGCGGGAGGAAAATGTTTACATGGCCAAGTTGGCCGAACAGGCCGAAAGGTATGAGGAAATGGTAGAGTTCATGGAGAAAGTTGCAAAGACTGTGGATGTTGAGGAGTTGACTGTTGAAGAAAGGAATCTCCTCTCTGTCGCTTATAAGAATGTCATTGGAGCTCGGAGGGCTTCATGGAGGATTATTTCTTCTATTGAGCAGAAGGAGGAGAGTCGGGGAAATGAGGACCACGTTGTTATTATCAAGGAATACCGGAGCAAGATCGAAACAGAGCTGAGCAAGATCTGTGACGGGATTTTGAGCTTACTTGAATCTCATCTCATCCCGTCAGCCTCATCTGCTGAATCTAAGGTGTTTTATCTCAAAATGAAGGGGGATTACCATAGGTATCTGGCTGAGTTCAAGACTGGAGCTGAGAGGAAGGAAGCGGCTGAGAGCACTTTACTAGCCTATAAGTCTGCTCAGGATATTGCACTTGCCGATTTGGCTCCTACTCATCCAATTAGGCTCGGACTTGCTCTTAACTTCTCAGTGTTTTATTATGAGATCCTTAATTCACCAGATCGTGCTTGCAATTTGGCAAAGCAGGCTTTTGATGAAGCCATTTCTGAGCTCGACACTCTAGGTGAAGAATCATACAAGGACAGTACCTTGATCATGCAACTCCTCCGAGACAATTTGACCCTTTGGACTTCTGATATAACGGATGATGCTGGGGATGAGATTAAGGAAGCATCAAAACGTGAATCAGGGGATGGACAGTAG 786 45.17 MSPVDSSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVVIIKEYRSKIETELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDDAGDEIKEASKRESGDGQ 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2161383 2163099 + evm.model.ptg000007l.347 HCH9g0347 550979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0347 261 PANTHER 14-3-3 PROTEIN 7 243 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
HCH9g0347 261 SMART 1433_4 8 251 IPR023410 -
HCH9g0347 261 PIRSF 14-3-3 3 250 IPR000308 -
HCH9g0347 261 Pfam 14-3-3 protein 14 238 IPR023410 -
HCH9g0347 261 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
HCH9g0347 261 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
HCH9g0347 261 Gene3D - 2 251 IPR036815 -
HCH9g0347 261 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
HCH9g0347 261 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
HCH9g0347 261 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
HCH9g0347 261 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
HCH9g0347 261 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
HCH9g0347 261 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
HCH9g0347 261 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
HCH9g0347 261 Coils Coil 14 34 - -
HCH9g0347 261 FunFam 14-3-3 protein epsilon 4 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0248 HCH-Chr12:1376281 HCH9g0347 HCH-Chr9:2161383 3.30E-118 dispersed
HCH12g0689 HCH-Chr12:4217141 HCH9g0347 HCH-Chr9:2161383 4.90E-103 dispersed
HCH4g0290 HCH-Chr4:1864433 HCH9g0347 HCH-Chr9:2161383 1.10E-102 dispersed
HCH7g0108 HCH-Chr7:670533 HCH9g0347 HCH-Chr9:2161383 1.20E-93 dispersed
HCH9g0347 HCH-Chr9:2161383 HCH4g0229 HCH-Chr4:1363839 2.90E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0347 K06630 - rcu:8261199 496.123