Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH9g0366 | ATGCGGATGAGTTGTAATGGTTGTAGAGTTCTCCGTAAAGGGTGTAGTGAAAATTGCAGTATCAGACCTTGTTTACAATGGATTAAAAACCCTGAATCTCAAGCCAACGCCACCGTTTTCCTCGCTAAATTCTATGGCCGTGCCGGACTTATGAACCTCATCAACGCCGGCCCTGAACATCTCCGTCCTGCGATATTCAGATCTTTATTATACGAGGCGTGTGGGAGAATTGTAAACCCCATTTATGGGTCAGTAGGGTTATTATGGTCAGGAAGTTGGCAACTTTGTCAAGGCGCCGTGGAATCCGTTCTTAAAGGAGCTCCGATCACGCCTATAAACTCCGACGCGGCGGCGCACGGCGATGGACCGCCTCTGAAGGCATACGATATTCGTCATGTTTCTAAAGATGAAAATTCCGTTGCCTCTGATGACGTGGCGCACCGTCGAGTCAAGACTCGGTGCCGGTTCAAGCGGACCTCTGTGAAATCGAAGGCGAGTAGAAATTCCGGTTCTAACGAATTGAACCGGTCGTCGAGCGGCGAGTCGTCGCTGAGTCATCAGTCTGACTCGCCGAATGTTGAGAATGAAAGTAAAGAAACGGAGAGTATGGCATCGGTGGAGACGATGACGGCGGCGGCCGAAACGGTGACGATGGCGTCCGTACCGACGGTTAACGGCGGGGCTGTTTCGGAAAGTGAATTGGCTCTAGAGCTGACGCTTGGGTTTGAGCCGATGTCACGTGTTCAGCACGTGATCCCGATGAAAAAGAGGAAGATTGAGGCCGATGGTGAGTTTAGGCTCAATAATAACGGCCCGTGTAGTACGGTTTTGGGGTTGGATTTTTCTGCTTGA | 852 | 50.7 | MRMSCNGCRVLRKGCSENCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQGAVESVLKGAPITPINSDAAAHGDGPPLKAYDIRHVSKDENSVASDDVAHRRVKTRCRFKRTSVKSKASRNSGSNELNRSSSGESSLSHQSDSPNVENESKETESMASVETMTAAAETVTMASVPTVNGGAVSESELALELTLGFEPMSRVQHVIPMKKRKIEADGEFRLNNNGPCSTVLGLDFSA | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 2278680 | 2279675 | - | evm.model.ptg000007l.366 | HCH9g0366 | 550998 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH9g0366 | 283 | MobiDBLite | consensus disorder prediction | 163 | 207 | - | - | |
| HCH9g0366 | 283 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
| HCH9g0366 | 283 | PIRSF | AS2 | 1 | 278 | IPR017414 | - | |
| HCH9g0366 | 283 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 243 | - | GO:0010468(PANTHER) | |
| HCH9g0366 | 283 | MobiDBLite | consensus disorder prediction | 156 | 207 | - | - | |
| HCH9g0366 | 283 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 101 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g0564 | HCH-Chr12:3326954 | HCH9g0366 | HCH-Chr9:2278680 | 2.90E-40 | dispersed | |
| HCH14g0354 | HCH-Chr14:32507561 | HCH9g0366 | HCH-Chr9:2278680 | 1.20E-41 | dispersed | |
| HCH1g0771 | HCH-Chr1:56481577 | HCH9g0366 | HCH-Chr9:2278680 | 1.30E-54 | wgd | |
| HCH8g1172 | HCH-Chr8:47293041 | HCH9g0366 | HCH-Chr9:2278680 | 4.10E-69 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34134 | PF03195 | LOB | 4.00E-24 | No_clan | HCH | TF |
Pathway information