Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0413 ATGGCTGAGAAATTCGATGGCATTGAAGAAGAACAAATCTCTAAGCTCGAAGAAGGATCTCTCCCCTCCAATACTCCCAAAAACAACACCCGTTTCTGTCCATCATCTCCTGTAATCACTGTCCAAAAGATTATAGCAGAGGTGATTGGGACGTACTTTGTGATATTTTCTGGGTGTGGATCGGTAGCTGTGAACAAGATCTATGGATCAGTAACGTTTCCAGGAATATGTGTGACGTGGGGTTTGATTGTTATGGTTATGGTTTATTGCGTTGGTCATATTTCTGGTGCTCATTTCAATCCTGCTGTTACCATTACTTTTGCCATTTTTCGTCGATTTCCCCCTGCCGAGGTTCCATATTATATAGGAGCTCAACTAATGGGATCCATACTTGCAAGCTGCACATTAGTTCTAATACTGGATATAACTCCTCAAGCTTTCTTTGGGACTGTGCCCATTGGATCTCATTTCCAATCTTTTGTTCTTGAAATCATCATTTCCTTCCTCTTGATGTTCGTCATTTCTGGTGTATCCACCGATAACAGAGCAGTGGGGGAACTAGCAGGAATTGCTGTTGGAATGACCATTCTCTTAAATGTCTTCGTCGCCGGGCCGATTTCGGGAGCTTCGATGAATCCGGCGAGGACGCTAGGACCGGCGATAGTGAAGCAACAATTCAAAGGGCTTTGGGTTTATATCATAGGGCCAATAATTGGCACCATCGCCGGTGGTTTTGCATATAACCTAATACGATTCACAGACAAGCCACTGCGTGAACTGACTAGAAGCAGCTCATTCCTCGCCGGCAGCCGGAGAACATAA 822 44.53 MAEKFDGIEEEQISKLEEGSLPSNTPKNNTRFCPSSPVITVQKIIAEVIGTYFVIFSGCGSVAVNKIYGSVTFPGICVTWGLIVMVMVYCVGHISGAHFNPAVTITFAIFRRFPPAEVPYYIGAQLMGSILASCTLVLILDITPQAFFGTVPIGSHFQSFVLEIIISFLLMFVISGVSTDNRAVGELAGIAVGMTILLNVFVAGPISGASMNPARTLGPAIVKQQFKGLWVYIIGPIIGTIAGGFAYNLIRFTDKPLRELTRSSSFLAGSRRT 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2596657 2599221 - evm.model.ptg000007l.413 HCH9g0413 551045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0413 273 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0413 273 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0413 273 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0413 273 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0413 273 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0413 273 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0413 273 ProSitePatterns MIP family signature. 98 106 IPR022357 -
HCH9g0413 273 Pfam Major intrinsic protein 40 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0413 273 PANTHER AQUAPORIN NIP2-1 30 255 IPR034294 -
HCH9g0413 273 CDD MIP 42 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0413 273 SUPERFAMILY Aquaporin-like 40 259 IPR023271 -
HCH9g0413 273 Gene3D Glycerol uptake facilitator protein. 6 260 IPR023271 -
HCH9g0413 273 NCBIfam MIP family channel protein 46 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1015 HCH-Chr14:37395091 HCH9g0413 HCH-Chr9:2596657 1.80E-82 dispersed
HCH9g0229 HCH-Chr9:1366315 HCH9g0413 HCH-Chr9:2596657 2.30E-56 dispersed
HCH9g0413 HCH-Chr9:2596657 HCH9g0588 HCH-Chr9:3961959 8.40E-16 dispersed
HCH9g0413 HCH-Chr9:2596657 HCH9g0227 HCH-Chr9:1349192 2.20E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0413 K09874 - csv:101215315 421.394